Pseudomonas anuradhapurensis: HU763_016595
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Entry
HU763_016595 CDS
T07691
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
panh
Pseudomonas anuradhapurensis
Pathway
panh03030
DNA replication
panh03410
Base excision repair
panh03420
Nucleotide excision repair
panh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
panh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HU763_016595 (ligA)
03410 Base excision repair
HU763_016595 (ligA)
03420 Nucleotide excision repair
HU763_016595 (ligA)
03430 Mismatch repair
HU763_016595 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
panh03032
]
HU763_016595 (ligA)
03400 DNA repair and recombination proteins [BR:
panh03400
]
HU763_016595 (ligA)
Enzymes [BR:
panh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HU763_016595 (ligA)
DNA replication proteins [BR:
panh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HU763_016595 (ligA)
DNA repair and recombination proteins [BR:
panh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HU763_016595 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HU763_016595 (ligA)
MMR (mismatch excision repair)
DNA ligase
HU763_016595 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HU763_016595 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
QXI46386
LinkDB
All DBs
Position
complement(3603759..3606089)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAESRIHELRHQLDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPHLVTPDSPTQR
VGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQPGAIDYSCEPKLDGLAV
SLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLRLQGEGWPAVLEVRGEVYMSKAGF
ERLNAAQAEAGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVGQVSASIGDSHIGI
LEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPAEARPVQVPSECPVCGSQVERTRLVK
RSKGKETTSEGAVYRCVGRLACAAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLEFEQIVGLEGFAEVSSRKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLAR
SLGSLARLRQALPQVLTYLPDIGLEVAYEIHNFFEDEHNQKVIQQLLDSGMQLQDEGELA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVARLDSLDKIIAADGIDLRQALAAKQADAVR
EFFKDEANQKLARDIEAQLLAFGMHWSNEKKVAEGLPLAGQTWVLTGTLERMSRDIAKEK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVAFLAEQGIAV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaatcccgtatccacgaactccgtcaccagctcgaccagcacaactaccgc
tactatgtgctcgacgagcccagcgtgcccgacgccgaatacgaccgcctgttcaacgag
ctgaaggcgcttgaagccgagcacccgcacctggtgacccccgactcgccgacccagcgc
gtcggcggcgcggccctggctgcgttcagccaggtacgccacgaagtgccgatgctgagc
ctgggcaacgcctttgaagaagctgacctgcgtgagttcggccgccgtgtggtcgatggc
ctcgaccagcccggtgcaatcgactacagctgcgagcccaagctcgacggcctggccgtg
agcctgctgtaccgtgacggcctgttggtgcagggcgccacccgtggcgacggcactacc
ggcgaagacatcagcgccaacgtgcgcaccgtgcgcaacatcccgctcaggctgcagggc
gagggttggccggcggtgctggaagtgcgtggcgaggtgtacatgagcaaggccggtttc
gagcggctcaacgccgcccaggccgaagccggtggcaagaccttcgccaacccgcgcaac
gccgccgccggcagcctgcgccagctggactcgaagatcaccgccagccgcccgctggag
ttctgctgctatggcgtcggtcaggtgtccgcgagcatcggcgacagccacatcggcatc
ctcgagcagctcaaggcctggggcttgccgatcagccgcgagctcaagcacgctgccggc
atcgaagagtgcctggcctactaccgcgacattggcgagcgacgcaacagcctgccctat
gagatcgacggcgtggtattcaaggtcaacagcctggcggcccagcgtgagctgggcttc
cgcgcccgtgaaccgcgctgggcgatcgcccacaagttccccgccatggaagagctgacc
gaggtgctggacgtcgagttccaggtcggccgcactggcgcggtgaccccggtggcccgc
ctgaagccggtcaaggtggcgggcgtgaccgtgtccaacgccaccctgcacaacatggac
gagatcgcgcgcctgggcctgcgcattggtgatacggtgatcatccgccgcgccggcgac
gtgatcccgcaggtgatgcaggtagtgctggagcgtcgcccggcggaggcccgcccggtg
caggtgccgagcgagtgcccggtgtgcggctcgcaggtcgagcgtacccggctggtcaag
cgcagcaagggcaaggaaaccaccagcgaaggcgcggtgtaccgctgcgtcggtcgcctg
gcctgcgccgcccagctcaagcaggcgatcatccattacgtgtcgcgccgcgccatggat
atcgacggcctgggcgagaagagcgtcgagcaactggtcgacgaaggcctgatcggctcg
ccggcggacttgtacaagctggagttcgagcagatcgtcggcctggaagggttcgccgaa
gtgtccagccgcaagctgctggatgccatcgaagccagcaagcgcccgagcctggcgcgc
tttatctatgccctgggcattccggacgtcggcgaagaaaccgccaaggtgctggcccgt
tcgctgggcagcctggcgcgcctccggcaggcgctgccgcaagtgctcacctacctgccg
gacatcgggctggaggtggcttacgaaattcacaacttcttcgaagacgagcataaccag
aaggtgatccagcaactgctcgacagcggcatgcagttgcaggacgaaggcgagctggct
gccgaattcgctgccagcacgaccctggcgggcatgatcgccaagctcgacatcgcctcg
gtcggcccgaccggtgctgaaaagctggtggccaggctcgacagcctggacaagatcatc
gccgccgacggcatcgacctgcgccaggccttggcggccaagcaggctgacgcggtgcgc
gagttcttcaaggatgaagccaaccagaaactggcgcgggacatcgaggcgcagttgctg
gcgttcggcatgcactggagcaatgagaagaaggtcgccgaaggcttgccactggccggc
cagacctgggtgctgaccggcaccctggagcgcatgagccgtgacattgccaaggaaaaa
ctggaaagcctgggagccaaggtggctggttcggtgtcaggcaagacccactgcgtggtg
gcggggccaggggcgggctccaagctggccaaggccagcgaactgggagtaaaggtactg
gacgaagacgccttcgttgccttcctggccgagcagggcatagccgtctga
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