Polynucleobacter antarcticus: DCO16_07575
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Entry
DCO16_07575 CDS
T08332
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pani
Polynucleobacter antarcticus
Pathway
pani03030
DNA replication
pani03410
Base excision repair
pani03420
Nucleotide excision repair
pani03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pani00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DCO16_07575 (ligA)
03410 Base excision repair
DCO16_07575 (ligA)
03420 Nucleotide excision repair
DCO16_07575 (ligA)
03430 Mismatch repair
DCO16_07575 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pani03032
]
DCO16_07575 (ligA)
03400 DNA repair and recombination proteins [BR:
pani03400
]
DCO16_07575 (ligA)
Enzymes [BR:
pani01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DCO16_07575 (ligA)
DNA replication proteins [BR:
pani03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DCO16_07575 (ligA)
DNA repair and recombination proteins [BR:
pani03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DCO16_07575 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DCO16_07575 (ligA)
MMR (mismatch excision repair)
DNA ligase
DCO16_07575 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DCO16_07575 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QKM62928
UniProt:
A0A6M9PTZ2
LinkDB
All DBs
Position
complement(1453016..1455031)
Genome browser
AA seq
671 aa
AA seq
DB search
MSSSHPTNLADRYAFLQSELARLEHAYYVLDNPLVPDSEYDRLYRELLDIELAHPQWITA
DSLSQRVGGAALKAFDSVTHVMPMLSLNNAFEDAELIAFDRRCREGLHLNQVEYAGELKF
DGLAISLRYEHGSLVRAATRGDGASGEDVTANIKTIRAIPLKLTGANIPAVLEVRGEVFM
YLEDFQKMNALAAQAGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFAYGLGALEPTSWL
PTTHEALLNVYVQLGLPVCSERRVLHSVEAILSFYNEIGSKREALPYDIDGVVYKVNSFT
EQAKLGFVSRAPRFALAHKFPAQEALTTVLGIDVQVGRTGAITPVARLSPVEVSGVIVTN
ATLHNEDEVKRKDVRIGDTVSVRRAGDVIPEVVSVIKERRPSDAQQFVMPTQCPVCDSHI
ERLVGEAIARCSGGLFCQAQRKQALIHFAHRRALDIEGLGEKIVDQLVDHNLVRTPADLY
RLGFSALANLERMGEKSADNLIKAIAQSRNTSLARFIFALGIRHVGETTAKDLANHYRSM
YALMDADVEDLLTVKDVGPVVADSITSFMQEAHNREVIEQLLASGMQLSVEEKVMSAAVA
GKTFVLTGTFPTLTRDEAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLTKAEELGVAV
IDEVGMLELLK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgtcttctcatccgacaaatctagcggatcgctatgcattcttgcaatctgaactc
gcacgcctagagcatgcttactatgtgctggataatcctttggtgccagatagtgagtac
gatcgcttatatcgtgagttactggatattgaattggctcatcctcaatggattactgca
gattccctctctcagagggtagggggtgcagcgctcaaagcgtttgattctgttacgcat
gtaatgcccatgctttctttgaataacgcttttgaagatgcagagctgattgcctttgat
cgacgttgccgagagggacttcatctcaatcaggtggagtacgcgggagagctcaagttt
gatggtttagcgatttcattacgctatgaacatggcagtctggtaagggccgctacacgt
ggtgatggagcaagcggcgaagatgtcacagcgaatattaaaaccatacgcgccattcca
ttaaagctaactggcgctaatattccagcagtgcttgaggtgcgtggcgaagtatttatg
tatctcgaagactttcagaagatgaacgcgctagccgcccaagctggagaaaaagagttt
gccaatccacgcaatgctgccgctggtagtttgcggcaattagattcaaagatcactgcc
aagcgaccattatcgttctttgcctacggtctaggagctttggagccgacttcttggttg
cctactacccatgaggccttactcaatgtgtatgtgcaattaggtttaccagtctgctcc
gagcgaagggtacttcattctgtggaagccatactctccttttataacgagattggcagc
aaaagagaggcgttaccttatgatatcgatggtgtcgtctataaggtgaactcttttaca
gagcaagctaaattaggatttgtgtctagagcaccgcgttttgcgctagctcataagttc
ccagcccaagaagcgctcactactgtactggggattgatgtgcaggtaggaagaactggc
gccattactcctgttgcgcgcttatcccctgtagaggtaagtggtgtcatagtcactaat
gccactttgcataacgaagatgaggtgaagcgtaaagacgttcgtattggtgatacggtt
tctgtgcgacgtgctggtgatgtgattcctgaagtggtatccgtcattaaagagcgtagg
ccatctgatgcacaacagtttgtaatgccaacccaatgtcctgtatgcgactcgcatatt
gagcgcttagtaggcgaagcgatagctcgctgtagtgggggtttattttgtcaggcacag
cgtaagcaggcacttattcactttgcccatcgtcgcgccttagatatcgaaggtttaggt
gagaagatcgttgatcaattagtcgatcacaatcttgtgagaacccctgcagatctctat
cgtttaggtttttctgctttggctaacctagaacgtatgggcgagaagtctgccgataat
ctgataaaagccattgcgcaatctcgcaatactagcttagcccgttttatctttgctctt
ggtattcggcatgtgggcgagacaacggctaaggatttagctaatcactaccgatccatg
tatgccctaatggatgcggacgttgaagatcttttgacagtcaaagatgtaggtccagta
gttgcagattccattaccagctttatgcaagaagcccataatcgagaagtgattgaacaa
ttacttgcttcaggcatgcagctctccgtagaagaaaaagtgatgagtgcagcagtagca
ggaaaaacctttgtgctcacaggcacattccccacgctaacacgtgatgaggcaaaagac
ttgcttgaaaaagcaggcgctaaagtcgctggctcggtctccaaaaaaactgactacgtt
gttgctggtacagatgctggcagcaaactcactaaggctgaagaattgggcgtggcagtc
attgatgaggtagggatgcttgagttattaaagtag
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