Pandoraea sp. NE5: PanNE5_39190 Help Entry PanNE5_39190      CDS       T10412                                  Symbol ligA_2 Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pann  Pandoraea sp. NE5 Pathway pann03030   DNA replication pann03410   Base excision repair pann03420   Nucleotide excision repair pann03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pann00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     PanNE5_39190 (ligA_2)    03410 Base excision repair     PanNE5_39190 (ligA_2)    03420 Nucleotide excision repair     PanNE5_39190 (ligA_2)    03430 Mismatch repair     PanNE5_39190 (ligA_2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pann03032]     PanNE5_39190 (ligA_2)    03400 DNA repair and recombination proteins [BR:pann03400]     PanNE5_39190 (ligA_2) Enzymes [BR:pann01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      PanNE5_39190 (ligA_2) DNA replication proteins [BR:pann03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      PanNE5_39190 (ligA_2) DNA repair and recombination proteins [BR:pann03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      PanNE5_39190 (ligA_2)    NER (nucleotide excision repair)     GGR (global genome repair) factors      PanNE5_39190 (ligA_2)    MMR (mismatch excision repair)     DNA ligase      PanNE5_39190 (ligA_2)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       PanNE5_39190 (ligA_2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD HHH PTCB-BRCT 5_3_exonuc BRCT_2 Motif Other DBs NCBI-ProteinID:  BDD94479 LinkDB All DBs Position complement(4379414..4381507) Genome browser AA seq 697 aa AA seqDB search MSQTSVPGQGANAPTATDASPAARRAAELRAELVRHNRAYYEEDAPLIPDAEYDRLFAEL VALETNHPELKRPDSPTQRVGGKPVEGFAQVVHRVPMLSLNNGFADEDVEAFDRRVSDGL RDGGAPTGDLFGAPVEYAAELKFDGLAIALRYERGVLVQAATRGDGTTGEEVTANIRTIK TIPLRLKTDNPPEVLEVRGEVLMFRADFDKLNRAQEAAHEKVFVNPRNAAAGSLRQLDSR ITAKRPLSFFAYGVGELVGVPMPETHSALLDWYVTLGIPVNGRREVVRGAQGLLAFYRAV GEARETLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTTLLDIEVQVGR TGAITPVARLSPVFVGGATVTNATLHNEDEIRRKDVMIGDTVIVRRAGDVIPEVVGSVLE RRPDDARAFVMPTACPVCGSAIEKLPDEVIARCTGGLICAAQRKQALLHFAQRRALDIEG LGDKLVEQLVDQHIIRTPADLFKLGVAKLAALDRMADKSASNLVAALETARHTTLARFIF ALGIRHVGEATAKDLARHFGKLDNVMAASTEELLAVPDVGPIVAQSIANFFGEPHNVEVI EQLRAAGVTWVESEPAAAAPLPLAGKTFVLTGTLPTLSRDEAKAMLEERGAKVAGSVSAK TDYVVAGAEAGSKLAKAEALGVPVLDEDAMRAMLAAL NT seq 2094 nt NT seq  +upstreamnt  +downstreamnt atgtcccaaacttctgttccgggtcagggcgcgaacgcccctaccgctaccgatgcatcg cccgccgcccgccgcgcggccgagttgcgtgccgagttggtgcgtcacaaccgcgcgtac tacgaagaggatgcgccgctgattccggatgccgagtacgaccgcctgtttgccgaactg gtcgcgctcgagacgaatcatcccgaattgaagcgtcccgattcgcccacgcaacgtgtg ggtggcaagccggtggaagggttcgcgcaggtcgtgcatcgcgtgccgatgctctcgctg aacaacggctttgccgacgaggatgttgaagcgttcgatcgtcgcgtgtcggatggactg cgcgatggtggcgcacccaccggcgatctgttcggcgcccccgtcgaatatgcggccgag ctgaagtttgacgggctcgcgatcgctttacgctatgagcgcggggtgctcgtgcaggca gccacgcgtggcgacggcacgacgggcgaggaggtcaccgcgaacatccgcacgatcaag acgattccgctgcgcctgaagaccgataacccgcccgaagtgctcgaggtgcggggtgaa gtgctgatgttccgggccgacttcgacaagctcaatcgggcgcaggaagcggcgcacgag aaggtgttcgtcaatccgcgcaacgcggcggcgggcagtctgcgacagctcgattcgagg attacggcgaagcgcccgttgtcgttctttgcttacggggtgggggagctggtgggtgtc ccgatgccggagacgcactcggcattgctcgactggtatgtcacgctcggaattccggtc aacgggcggcgcgaagtcgtgcggggcgcacaggggttgctggcgttctaccgcgcggtg ggagaggcgcgtgagacgctgccttacgacatcgatggcgtcgtctacaaggtcaaccgt cgcgacgagcaggatcggcttggatttgtctcacgcgccccgcgcttcgcgctggcgcac aagtttccggcgcaggaggcgctgacgacgttgctcgacatcgaagtgcaggtggggcga accggggcaattacgccggtggcgcggctctcgcccgtctttgtcggcggggcgaccgtc acgaatgctacgctgcacaacgaagacgagattcgccgcaaggacgtaatgattggcgat acggtgatcgtgcgccgggcgggcgatgtgattccggaagtcgtcggatcggtgctcgag cgtcgaccggacgatgcaagagcgttcgtcatgccgacggcgtgcccggtgtgcggatcg gccatcgagaaactgcccgacgaggtgatcgcgcgatgcacgggcggcttgatttgcgcg gcgcagcgcaagcaggcgttgctgcacttcgcccagcgtcgggcgctcgacatcgagggg cttggcgacaagctcgtggagcagctggttgaccagcacatcattcgcacgcctgcggat ctgttcaaactgggcgtggcgaagcttgccgcgcttgaccggatggccgacaagtcggcg tccaatctcgtggcggcgctggagacggcccgtcacacgacgctggcgcggttcatcttc gcgttgggtattcgccatgtgggcgaggcgacggcgaaggatctcgcgcgtcattttggc aagctcgacaatgtgatggcggcgagcaccgaggaattgctggccgtgcccgacgtcgga ccgattgtggcccaatccatcgccaatttctttggcgaaccgcataatgtcgaagtgatt gagcaactgcgggcggcgggcgtgacctgggtggaatctgagccggcggctgcggcaccg ctgccgctggccggcaagaccttcgtgctcacaggcacgctgccgacgctctcgcgcgac gaggcgaaagccatgctggaggagcggggagcaaaggttgccggctcggtttctgcgaaa accgactacgtggtcgcgggcgcagaagccggcagcaagttggcgaaggccgaggcactg ggtgtgcccgtgctggacgaagacgctatgcgggcgatgttggccgcgctttga

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