Pantoea sp. SO10: FCN45_13745
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Entry
FCN45_13745 CDS
T06053
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pans
Pantoea sp. SO10
Pathway
pans03030
DNA replication
pans03410
Base excision repair
pans03420
Nucleotide excision repair
pans03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pans00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FCN45_13745 (ligA)
03410 Base excision repair
FCN45_13745 (ligA)
03420 Nucleotide excision repair
FCN45_13745 (ligA)
03430 Mismatch repair
FCN45_13745 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pans03032
]
FCN45_13745 (ligA)
03400 DNA repair and recombination proteins [BR:
pans03400
]
FCN45_13745 (ligA)
Enzymes [BR:
pans01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FCN45_13745 (ligA)
DNA replication proteins [BR:
pans03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FCN45_13745 (ligA)
DNA repair and recombination proteins [BR:
pans03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FCN45_13745 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FCN45_13745 (ligA)
MMR (mismatch excision repair)
DNA ligase
FCN45_13745 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FCN45_13745 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
HHH
DUF4874
S-Me-THD_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QCP60378
LinkDB
All DBs
Position
complement(2965903..2967921)
Genome browser
AA seq
672 aa
AA seq
DB search
MKSVQEQITALRTTLRHHEYLYHVMDTPEIPDAEYDRLMVQLRELESAHPDLITPDSPTQ
RVGAAPLATFEQVRHEVPMLSLDNTFDEAGFLAFNKRVQDRLKSTDELTYCCELKLDGLA
VSLLYEDGLLVRAATRGDGTTGENITANVRTIHAIPLRLHGDNIPARVEVRGEVFITESG
FEKLNEEARRTGAKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPASHW
QRLQQFKAWGLPVTDRIRLAHSADEVLAFYRQVEQERPSLGFDIDGVVIKVDSQALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVVVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPAETREIVFPGHCPVCGSDVERVEG
EVVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVLTPADLFRLTAG
KLTGLDRMGPKSAQNVVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELEKVMN
ADLDALIEVQDVGKVVATHVRNFMDEESNRAVIRDLTEEIGVHWPQVEVVNVEEIDSPFA
GKTVVLTGSLSQMNRDDAKERLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIPV
IDEAEMIRLLGA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcggttcaggagcagatcaccgcgctgcgcaccacgttacgtcaccacgaatat
ctctaccacgtgatggatacgccggaaattccggatgcagagtatgatcgattgatggtt
cagctgcgtgagctggaaagcgcacatcctgatttgattacccctgattcacccacccaa
cgcgtgggcgcggcaccgctagccacttttgagcaagtgcgtcatgaagtgccgatgttg
tcgctggacaacacctttgatgaagcgggcttccttgcctttaataaacgcgtgcaggat
cgccttaaaagcactgacgaattgacttactgctgcgagctcaagctggatggtttagcc
gtaagcttgctgtatgaagatggcctgctggtgcgtgcggcgacgcgcggagatggtacc
actggcgagaacattacggcgaacgtgcgcacaattcacgccattccgctgcgtctgcat
ggcgataacattcccgcacgcgttgaagtgcgcggcgaagtgtttatcaccgaaagcggt
tttgaaaagctgaatgaagaagcgcgtcgcaccggcgcgaaagtctttgctaacccacgc
aatgccgcagccggttcactgcgccagctcgatccgcgcatcaccgctaaacgtccactg
accttcttctgctacggctttggcctgctggaaggcggtgaaatgcctgccagccattgg
caacgtctgcaacagtttaaagcgtggggattgccggtcaccgatcgtattcgtctggct
cacagcgctgatgaggtgctggcgttttatcgtcaggttgagcaggagcgcccgtcgctc
ggcttcgatatcgatggcgtggttatcaaggtcgattctcaggcgctgcaagagcagctc
ggctttgtggcgcgtgcgccgcgctgggctgtggcctttaaattcccggcgcaggaacag
atgacgttcgtgcgcgatgtcgaattccaggtgggccgcaccggcgcgattacgcccgtc
gcgcgtctggagccggttcaggttgcgggcgttgtggtaagtaatgccacgctgcacaac
gccgatgaaattgcccgactgggtttgcgcattggcgacaaggtggtgattcgccgcgct
ggtgacgtgattccgcaagtggtcaacgtggtggaatcggagcgcccggcagagacgcgt
gaaatcgtcttcccaggtcattgcccggtgtgcggttcagacgttgaacgcgtggaaggt
gaagtcgtgacgcgctgcaccggcggcctgatttgtggcgcgcagcgtaaagaagcgctt
aaacacttcgtttcgcgtcgtgcgatggatgtcgatggcatgggcgataagatcatcgat
cagttggtggagaaagagtacgtcttaacgcctgccgatctgttccgccttactgccggt
aagctaaccggactcgatcgcatgggccctaaatcggctcagaacgtggttgatgcgctg
gaaaaggccaaatccaccacgctggcacgtttcctctatgcgctgggtattcgcgaagtg
ggcgaagctactgccgccaaccttgccaatcactttggcgagctggaaaaggtgatgaat
gccgatctcgatgcgctgattgaagtgcaggatgttggcaaagtggtggcgacgcatgtg
cgtaactttatggatgaagagagcaaccgcgccgttattcgcgatcttactgaagagatt
ggcgtgcactggccgcaggttgaagtggtcaatgtcgaagaaattgatagtccatttgcc
ggtaaaaccgtggtactgaccggctctctgtcgcagatgaatcgcgatgatgccaaagag
cgtctggtagcgttgggcgctaaagtgagcggtagcgtgtcgaagaaaaccgatttgctg
attgcgggggaagcggccggttccaagctggcgaaagcgcaggagctcggcattccggtg
atcgacgaagcggaaatgattcgcctgctcggagcgtaa
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