Pantoea sp. PSNIH1: PSNIH1_00945
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Entry
PSNIH1_00945 CDS
T03464
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pant
Pantoea sp. PSNIH1
Pathway
pant03030
DNA replication
pant03410
Base excision repair
pant03420
Nucleotide excision repair
pant03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSNIH1_00945 (ligA)
03410 Base excision repair
PSNIH1_00945 (ligA)
03420 Nucleotide excision repair
PSNIH1_00945 (ligA)
03430 Mismatch repair
PSNIH1_00945 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pant03032
]
PSNIH1_00945 (ligA)
03400 DNA repair and recombination proteins [BR:
pant03400
]
PSNIH1_00945 (ligA)
Enzymes [BR:
pant01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSNIH1_00945 (ligA)
DNA replication proteins [BR:
pant03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSNIH1_00945 (ligA)
DNA repair and recombination proteins [BR:
pant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSNIH1_00945 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSNIH1_00945 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSNIH1_00945 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSNIH1_00945 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DUF4874
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AIX48919
LinkDB
All DBs
Position
complement(158320..160338)
Genome browser
AA seq
672 aa
AA seq
DB search
MKSVQEQIAALSTTLRHHEYLYHVMDAPEVPDAEYDRLMNQLRELERAHPDLITPDSPTQ
RVGAAPLTAFEQVRHEVPMLSLDNTFDEAGFRAFNKRVQDRLKSSDELTYCCELKLDGLA
VSLLYENGLLVRAATRGDGTTGENITANVRTVRAIPLRLRGDNIPARLEVRGEVFMTESG
FEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITARRPLTFFCYGFGLLEGGEIPASHW
ERLQQFKAWGLPVSERIKRVHTADEALAFYHHIEQERPKLGFDIDGVVIKVDSQALQERL
GFVARAPRWAIAFKFPAQEQLTVVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHN
ADEIARLGLRIGDRVAIRRAGDVIPQVVSVVESDRPADAREIVFPQHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGDKIIDQLVEKEYVKTPADLFRLTAG
KLTGLDRMGPKSAQNVVAALEKAKLTTLPRFLYALGIREVGEATAANLARHFGELERVMN
ADLDALIAVPDVGKVVAAHVRNFMEEESNREVIRELTEEIGIHWPAVAVIKAEEIDSPFA
GKTVVLTGSLSQMNRDDAKARLAALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIPV
IDEAEMIRLLDA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcagttcaggagcagatcgcagcgctcagtaccacgctgcgtcatcatgagtat
ctctaccacgtgatggatgcgccggaagtcccggatgctgaatatgaccggctgatgaat
cagctgcgcgagctggagcgtgcgcatcccgatctgattacccccgactcacctacgcag
cgggtcggcgcggcgccgctgaccgcttttgagcaggtgcggcatgaagtgccgatgctg
tcgctggataacacctttgatgaggcagggttccgcgcctttaacaaacgcgtacaggat
cggcttaagagcagcgatgagctgacctactgctgtgaactcaaacttgatggtctggcg
gtcagcctgctgtatgaaaacggcttactggtgcgggccgctacccgcggcgacggcaca
accggcgaaaatatcaccgctaacgtgcgcaccgtccgggcgatcccgctgcggctgcgg
ggcgataatatcccggcgcggctggaagtgcgcggtgaagtgtttatgactgaaagcggg
tttgaaaagctcaatgaggaagcgcggcgtaccggtggcaaagtctttgcgaatccgcgc
aatgcggcagccggctcactgcgtcagctcgatccccgcatcaccgccagacgcccgcta
accttcttctgctacggctttggcctgctggagggcggcgagatcccggccagccactgg
gaacgcctgcagcagtttaaagcctggggtttaccggtcagtgagcggatcaaacgggtt
cataccgctgatgaagcgctggcgttttatcatcatattgagcaggagcggcctaaactc
gggtttgatatcgacggcgtggtaatcaaagtcgattcacaggcgctgcaggagcggctc
ggttttgtggcgcgcgcgccgcgctgggcgatcgccttcaaattcccggcacaggagcag
ctgaccgtggtgcgcgacgttgagtttcaggtcggacgcaccggggccattacgccagta
gcgcgtctcgaacccgtgcaggtcgcaggggtcatggtaagtaatgccactctgcataac
gccgatgagatcgcccgtctcggcctgcgcatcggcgaccgggtagcgattcgccgcgct
ggtgacgtgatcccgcaggtggtcagcgtggtagagtctgaccggccggctgacgcgcgt
gaaattgtgtttccgcagcactgcccggtgtgtggctctgacgtggagcgggtagagggt
gaagcggtaacgcgctgtaccggagggctgatctgcggtgcccagcgtaaagaggcgctt
aagcattttgtctcgcgtcgcgccatggatgtggatggcatgggagataaaatcatcgat
cagctggttgagaaagagtatgtgaaaacgccagccgatctgtttcgcctgacggccggt
aaactgaccggactggatcgcatggggccgaaatcggcacaaaacgtggtggccgcactc
gaaaaagctaaactgacgacgctgccgcggttcctgtatgcgctggggatccgcgaggtg
ggtgaagccacggcagctaacctcgcccgtcactttggcgagctggagcgggtgatgaat
gccgatctcgatgcgctgattgccgtgccggatgtgggtaaggttgttgccgctcacgtc
cgcaattttatggaagaagagagcaaccgtgaggtgatccgcgagctgacagaagagatc
ggcattcactggcctgccgtcgcggtgatcaaagcagaagagatcgatagtccctttgcc
ggtaaaacggtggtgcttaccggctctctgtcgcagatgaatcgcgatgatgcgaaagcg
cgtcttgccgcgctgggcgccaaagtcagcggcagcgtatcaaagaaaaccgatctgctg
atcgccggcgaagcggcgggctccaagctggcgaaggcccaggagctgggtattccggtt
attgacgaagcggagatgatccgcctgctggacgcataa
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