Paenarthrobacter sp. NyZ202: ACPFL9_07120
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Entry
ACPFL9_07120 CDS
T11214
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pany Paenarthrobacter sp. NyZ202
Pathway
pany03030
DNA replication
pany03410
Base excision repair
pany03420
Nucleotide excision repair
pany03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pany00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACPFL9_07120 (ligA)
03410 Base excision repair
ACPFL9_07120 (ligA)
03420 Nucleotide excision repair
ACPFL9_07120 (ligA)
03430 Mismatch repair
ACPFL9_07120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pany03032
]
ACPFL9_07120 (ligA)
03400 DNA repair and recombination proteins [BR:
pany03400
]
ACPFL9_07120 (ligA)
Enzymes [BR:
pany01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACPFL9_07120 (ligA)
DNA replication proteins [BR:
pany03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACPFL9_07120 (ligA)
DNA repair and recombination proteins [BR:
pany03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACPFL9_07120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACPFL9_07120 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACPFL9_07120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACPFL9_07120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_TFIIB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
XRQ35379
LinkDB
All DBs
Position
1535213..1537498
Genome browser
AA seq
761 aa
AA seq
DB search
MSTREKTDPVDTSSQEPAAAVAALEGATPSEALRDEYEHLADQVRKYRYAYYQEDEPLVS
DAEFDELYRRLEELEALHPELVSNDSPTQEVGGEVSSAFAAVQHLQRMYSLDDVFSLDEL
EAWVRKAEASAAKLGDSVPPIAWLTELKIDGLAVNLLYRDGQLVRAATRGDGTTGEDITH
NVLTIKEIPRRLSGSGYPSEVEIRGEVFIPSKAFAEFNEALVAAGKAPLANPRNAAAGSL
RQKDPAETAKRPLSMFVHGIGAREGLDARSQSETYALLAGWGLPVSPYFKVLDTYQGVLE
FIAHYGEHRHDLLHEIDGIVVKIDDFATQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIA
VNVGRTGRVTPFGLMEPVKVAGSTVGMATLHNQDVVKAKGVMIGDIVILRKAGDVIPEIV
GPVLALRDKQDPPVREFVMPTECPSCGTPLAPAKESDVDIRCPNAKSCPSQLRERVFHVA
SRGAFDIEALGWEAAVALTQPAEPETPPLTSEAALFSLTREDLANVLIRREKKSKGVGTG
QYELVPYFYTRGSAKTPSKPTATTEKLFAELEKAKQQPLWRVLVALSIRHVGPTASRALA
TNFGSMDAIRNATEEQLAHVDGVGPTIAAALKEWFAVDWHNEIVDSWAAAGVRMEDERDT
ATPRTLEGLTIVVTGTLPNFSRDEAKEAIIIRGGKASGSVSKNTSYLVAGESAGSKLDKA
EQLGIPVLDEDGFRDLLANGPATPEAGDDAGESQPVETAAQ
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacacgcgagaagacagatccggtcgacaccagcagccaggaacccgccgcagcc
gtcgcagccctggagggcgcaacgccgtcggaggccttgcgggacgagtatgagcacctt
gcggaccaggtccgcaaataccggtatgcctactatcaggaagacgagccgctcgtttcc
gatgccgagttcgatgagctctaccgccgcctggaagaactcgaagcgctgcacccggag
ctggtctccaatgattcgcccacccaggaagtcggcggcgaggtctcttccgccttcgcg
gccgtgcaacacctgcagcggatgtacagcctggacgatgtcttctcacttgatgaactc
gaagcctgggtccgcaaggctgaagcgtccgcggccaagctcggggacagcgttccaccc
atcgcatggctgaccgagttgaagatcgacggcctggccgtgaatctcttgtaccgggac
ggccagctggtccgtgccgccacgcgcggcgacggcactaccggtgaagacatcacccac
aacgtcctcaccatcaaggagatcccgcgcaggctcagcggctccgggtatccctccgag
gtggagatccgcggcgaagtcttcatcccttcaaaagcatttgccgaattcaacgaggcg
ctggtggcagcaggcaaggcgccgctggcgaatccccgcaacgccgctgcaggctcgctg
cggcagaaggaccctgcggaaacagccaagcgcccgctgagcatgttcgtccacggcatc
ggcgcacgcgaaggcctggacgccaggagccagtccgaaacctatgcgttgctggccgga
tggggactgcccgtgagcccgtacttcaaggtgctggatacatatcaaggcgtcctggaa
ttcatcgcccactacggcgagcaccgccatgacctcctgcacgaaatcgacggcatcgtg
gtcaagatcgacgacttcgccacccagcgcgccttgggttacacctcgcgcgtgccgcgc
tgggctgccgcctacaagtaccccccggaggaagtccacaccaagctgttggatatcgcc
gtcaacgtgggccggaccggccgcgtcacgcccttcggactgatggaaccggtcaaggtg
gcaggctcgaccgtgggcatggccacgctccacaaccaggatgtggtcaaggccaagggc
gtcatgatcggcgacatcgtgatcctgcgcaaggcaggggacgtcatcccggagattgtt
ggcccggtgctggcgctcagggacaagcaggatccgccggtgcgtgagttcgtgatgccc
accgaatgtccctcctgtggcacgccgctggccccggccaaggaaagcgacgttgatatc
cggtgccccaacgccaaatcgtgcccgtcgcagctgcgtgagcgcgtgttccacgtggcc
agccgtggcgccttcgacattgaggcattggggtgggaagccgccgtcgcgctgacccag
cctgccgaaccggaaaccccgccgctcaccagcgaggcagcgctgttcagcctgaccagg
gaagaccttgccaacgtcctgatccggcgggaaaagaagtccaagggtgtgggcacgggc
cagtacgagctcgttccgtacttctacacccggggaagtgccaagaccccgtccaagccc
accgccaccacggaaaaactgttcgcggaattggagaaagcaaagcagcagcccttgtgg
cgtgtcctcgtggccctctccatccggcatgtgggacccacggcatcccgggcgttggcc
accaacttcggcagcatggacgccatccggaatgccacggaagagcagctggcccatgtg
gacggtgtgggacccaccatcgcggctgcactgaaggaatggtttgccgtggactggcat
aacgagatcgtggacagctgggcagctgccggggtgcgcatggaggacgaacgcgacacc
gcgactccgcgcaccttggaaggcctcaccattgtggtcaccggtactttgcccaatttc
agccgcgacgaagccaaggaagccatcatcatccgcggtgggaaggcatcaggatccgtc
tccaagaacaccagctacctggtggcgggggagagcgcgggcagcaagctggacaaggcg
gagcagctgggcatcccggtcctcgatgaggacggattccgcgacctcctcgccaacggg
ccagccaccccggaggccggagacgatgccggcgagtcccaaccggtggaaactgcagcc
caatga
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