Paraburkholderia sp. PGU19: PPGU19_014510
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Entry
PPGU19_014510 CDS
T11835
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
papg Paraburkholderia sp. PGU19
Pathway
papg03030
DNA replication
papg03410
Base excision repair
papg03420
Nucleotide excision repair
papg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
papg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPGU19_014510 (ligA)
03410 Base excision repair
PPGU19_014510 (ligA)
03420 Nucleotide excision repair
PPGU19_014510 (ligA)
03430 Mismatch repair
PPGU19_014510 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
papg03032
]
PPGU19_014510 (ligA)
03400 DNA repair and recombination proteins [BR:
papg03400
]
PPGU19_014510 (ligA)
Enzymes [BR:
papg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PPGU19_014510 (ligA)
DNA replication proteins [BR:
papg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PPGU19_014510 (ligA)
DNA repair and recombination proteins [BR:
papg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PPGU19_014510 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPGU19_014510 (ligA)
MMR (mismatch excision repair)
DNA ligase
PPGU19_014510 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PPGU19_014510 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
MctB
PGRL1_N
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCF96882
LinkDB
All DBs
Position
1:1574936..1576987
Genome browser
AA seq
683 aa
AA seq
DB search
MARTKVPDPATSAPAERALWLRAELERANHAYYVLDQPDLPDAEYDRLFKELQQVESEHP
DLITPDSPTQRVGGEVASGFRPVVHDMPMLSLNNGFSDEDIAAFDKRVSDALREASVDYA
CELKFDGLAISLRYVDGQFTQASTRGDGATGEDVTENVRTIRSIPLKLKGKRVPKLLDVR
GEVLMFKRDFDKLNQRQRDAEQREFANPRNAAAGSLRQLDSKVTAQRPLSFFAYGIGVLD
GIEMPATHSELLDWYHEMGLPVNSERAVVQGAEGLLGFFQKVGGKRDTLPYDIDGVVYKV
NRRDQQDTLGFVSRAPRFALAHKFPAQEALTKLLAIDVQVGRTGAITPVARLEPVFVGGA
TVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALLDHRPADAHEFVMPTQCPVC
GSAIERLPDEAIARCSGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVELNLVRTP
ADLFNLGFATLAELDRFAEKSAQNLIDSLEKAKHTTLARFIYALGIRHVGESTAKDLAKH
FGSLTPIMDASVEELLEVNDVGPIVAEAIHQFFAEEHNRTVIEQLRAPGKVTWPEGPPAP
KAPQGVLAGKTVVLTGTLPTMGRDEAKELLEAAGAKVAGSVSKKTDYVVAGAEAGSKLAK
AEELGIPVLDEDGMRKLLEGQTT
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaccaaagtccctgatccagcaaccagcgcacccgccgagcgggcgttgtgg
ctgcgcgccgaactcgagcgcgcgaaccacgcgtactatgtgctcgaccagccggacttg
cccgacgccgaatacgacaggctgttcaaggaactgcagcaggtcgaaagcgagcatccc
gatctgatcacgccggattcgcccacgcagcgggtcggcggcgaagtggcgagcggcttt
cggcccgtcgtgcacgacatgcccatgctgtcgctgaacaacggcttttcggatgaagac
atcgcggctttcgacaagcgcgtgtcggacgcgttgcgcgaggcgagcgtcgactacgcg
tgcgaactgaagttcgacggcctggccatctcgctgcgctacgtggacggccagttcact
caggcgtccacgcgcggcgacggcgcgacaggcgaggatgtgacggagaacgtgcgcacc
atccgctcgatacctctgaagctcaagggcaagcgcgtgccgaagctgctcgacgtgcgc
ggcgaagtcctgatgttcaagcgcgatttcgacaagctgaaccagcgtcagcgtgacgcg
gaacagcgcgagttcgcgaacccgcgcaacgcggcggcaggcagcttgcggcaactggat
tcgaaggtcaccgcgcagcgtccgctgtcgttctttgcgtatgggatcggcgtgctcgac
ggcatcgagatgccggccacgcacagcgaactgctcgactggtatcacgagatgggcttg
cccgtgaacagcgagcgggccgtcgtgcagggcgctgaagggctgctcggctttttccag
aaggtgggcgggaagcgcgacacgctgccctacgatatcgacggcgtcgtctacaaggtg
aaccgccgcgaccagcaggacacgctgggcttcgtgtcgcgcgcaccgcgctttgcgctc
gcgcacaagttcccggcgcaagaggcgttgacgaagcttctcgccatcgacgtacaggtg
ggacgcacgggcgcgatcacgcctgtcgcgcggctcgagccggtgttcgtcggcggcgcg
acggtgacgaacgcgacgctgcacaacgaggacgaagtgcgtcgcaaggatatccgcatc
ggcgacactgtcatcgtgcgacgcgcaggcgacgtgattcccgaggtggtcggcgcgctg
ctcgaccaccgcccggccgacgcgcacgagttcgtgatgccgacgcaatgccccgtgtgc
ggctccgcaatcgaacgtctgccggacgaagcgatcgcgcgctgctcgggcggtctgttc
tgtccggcacagcgcaagcaggcgctgtggcacttcgcgcagcgccgcgcgctcgatatc
gacggactgggcgagaagatcatcgatcaactcgttgaactgaatctggtgcgcacgccc
gccgatctcttcaacctgggctttgcgacactcgcggaactcgaccgcttcgcggaaaag
tccgcgcagaacctcatcgactcgctcgaaaaggccaagcacaccacgctcgcgcgcttc
atctacgcgctcggcatccggcatgtcggcgaatcgacggcgaaagatctggcgaagcac
ttcggctcgctcacgccgatcatggatgcgtcggtagaagaactgctcgaagtgaacgac
gtcggccccatcgtcgccgaggcgatccatcagttcttcgccgaggagcacaaccgcacg
gtcatcgagcagttgcgtgcgcccggcaaggtgacgtggccggaaggcccgcccgcgccg
aaggcgccgcaaggcgtgctggcgggcaagacggtcgtgctgacgggcacgctgcccacc
atgggccgtgacgaggcgaaggagttgctggaagcggccggtgcgaaggtggccggctcg
gtgtcgaagaagaccgactacgtggtggcgggtgccgaagcgggcagcaagctcgcaaag
gccgaggaactcggcatccccgtgcttgacgaagatggtatgcgtaagctcctggagggg
cagacaacatga
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