Pandoraea apista: SG18_18875
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Entry
SG18_18875 CDS
T03588
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
papi
Pandoraea apista
Pathway
papi03030
DNA replication
papi03410
Base excision repair
papi03420
Nucleotide excision repair
papi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
papi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SG18_18875 (ligA)
03410 Base excision repair
SG18_18875 (ligA)
03420 Nucleotide excision repair
SG18_18875 (ligA)
03430 Mismatch repair
SG18_18875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
papi03032
]
SG18_18875 (ligA)
03400 DNA repair and recombination proteins [BR:
papi03400
]
SG18_18875 (ligA)
Enzymes [BR:
papi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SG18_18875 (ligA)
DNA replication proteins [BR:
papi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SG18_18875 (ligA)
DNA repair and recombination proteins [BR:
papi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SG18_18875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SG18_18875 (ligA)
MMR (mismatch excision repair)
DNA ligase
SG18_18875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SG18_18875 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AJE99748
UniProt:
A0ABX9ZR87
LinkDB
All DBs
Position
789213..791306
Genome browser
AA seq
697 aa
AA seq
DB search
MSQTSVPGQGANAPTAADATAAAQRAAELRIELARHNRAYYEDDAPLIPDAEYDRLFGEL
VALETDFPELQRPDSPTQRVGGKPVDGFAPVVHRVPMLSLNNGFADEDVEAFDRRVSDGL
RDGNAPSGDLFGAPVEYAAELKFDGLAIALRYEHGVLVQAATRGDGTTGEDVTANIRTIK
KIPLSLDTDNPPEVLEVRGEVLMFRADFDKLNRAQEAAGEKVFVNPRNAAAGSLRQLDSK
ITARRPLSFFAYGVGELVGVPMPETHSALLDWYVTLGIPVNERREVVHGAAGLLAFYRAV
GEARESLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTTLLDIEVQVGR
TGAITPVARLAPVFVGGATVTNATLHNEDEIRRKDVMIGDTVIVRRAGDVIPEVVGSVLE
RRPADARAFVMPTACPVCGSAIEKLPDEVIARCTGGLICAAQRKQALLHFAQRRALDIEG
LGDKLVEQLVDQQIIRTPADLFKLGVAKLAALDRMADKSASNLVAALETARHTTLARFIF
ALGIRHVGEATAKDLARHFGKLDNVMAASTEELLAVPDVGPIVAQSIANFFGEPHNVEVI
EQLRAAGVTWPESEPAAVAPLPLAGKTFVLTGTLPTLSRDEAKAMLEERGAKVAGSVSAK
TDYVVAGAEAGSKLAKAEALGVPVLDEEAMRAMLAAL
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaacttccgttccgggtcagggcgcgaacgcgccgacagcggccgatgcaacg
gccgctgcgcaacgtgctgccgaattgcgcatcgaactggcgcgtcacaaccgcgcctat
tacgaagacgatgcgccgctgattcccgatgccgagtacgaccgcctgttcggcgaactg
gtcgcactcgagaccgatttcccagaattgcaacgtcccgattcgcccacgcaacgtgta
ggcggcaagccggtggatggattcgcgccggtcgtgcaccgggtaccgatgctctcgctc
aataacggctttgcggatgaggacgtcgaggcgttcgaccgccgggtgtccgatgggctt
cgcgatggcaatgcgccgtcgggcgatctgttcggcgcgccggtcgaatatgcggccgag
ttgaagttcgacggcctggcaattgccctgcgttacgagcacggtgtgctggtgcaggcg
gcaacgcgcggcgatggcacgaccggtgaggatgttaccgcgaatatccgcacaatcaag
aagatcccgttgagcctcgacacagacaacccgccggaagtgcttgaggtacggggcgag
gtgctgatgttccgtgccgacttcgacaaactcaatcgcgctcaggaagcggcaggcgag
aaggtcttcgtcaatccgcgcaatgcggcggcaggcagcctgcgacaactcgattcgaag
attacggccagacgtccgttgtcgttttttgcgtacggggtaggcgaattggtgggtgtc
cccatgccggagacacactcggccttgctcgattggtacgttacgctgggcattccggtg
aacgagcgccgcgaggtcgtgcacggcgccgccgggttgctggcgttctaccgggcggtg
ggcgaggcgcgtgaatcgctgccgtacgatatcgatggggtggtctacaaggtcaatcgc
cgcgacgagcaggaccgtcttgggtttgtctcgcgcgcgccgcgcttcgcactggcacat
aagttcccggctcaggaagcgctgacgacattgctggacattgaagtgcaggtggggcga
accggcgcgattacgccggtggcacggctcgcgccggtgttcgtcggcggggcgacggtg
accaatgccacgttgcacaacgaggacgagatccgccgtaaggacgtcatgatcggcgat
acggtgattgtgcgccgagcgggcgatgtaattcccgaagttgtcggatcggtgctcgaa
cgccggccggccgacgcacgggcgtttgtcatgccgacggcgtgccccgtgtgcggttcg
gccatcgagaagttgccggacgaggtgatcgcgcgctgcaccggcgggctgatctgcgcg
gcgcagcgcaagcaggcgttactgcactttgctcaacgccgggcgctcgacatcgaaggg
cttggcgacaagctcgtcgagcaactggtcgaccagcagatcattcggacgccggcggac
cttttcaagctcggtgtcgccaagctcgcggcgcttgatcgcatggcggacaagtcggcg
tcgaatctggtggcggcgctggagacggcgcgtcacaccacgctggcgcggttcatcttc
gcgctgggtatccgtcatgtgggcgaggcgacggcgaaggatctggcacgtcatttcggc
aagctcgataacgtgatggcggcaagtacagaggaactgctggcggtgccggacgtcgga
cctattgtggcgcagtccatcgccaatttctttggcgagccccataatgtcgaggtcatc
gaacaattgcgggcggccggtgtgacctggccggaatccgagcctgcggccgtggcgccg
ctgccgttggccggcaagacgttcgtgctgacgggcacgctgccgacgctctctcgcgac
gaggcgaaagccatgctcgaggagcggggggcgaaggtggcgggttcggtgtcggcgaag
accgactacgtggtggcgggcgctgaggcgggcagtaaattggcgaaagcagaggcactg
ggggtgcctgtgctggacgaagaggctatgcgggcgatgttggccgcgctttga
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integrated database retrieval system
