Kinneretia aquatilis: K9V56_010890
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Entry
K9V56_010890 CDS
T09144
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paqa
Kinneretia aquatilis
Pathway
paqa03030
DNA replication
paqa03410
Base excision repair
paqa03420
Nucleotide excision repair
paqa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paqa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K9V56_010890 (ligA)
03410 Base excision repair
K9V56_010890 (ligA)
03420 Nucleotide excision repair
K9V56_010890 (ligA)
03430 Mismatch repair
K9V56_010890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paqa03032
]
K9V56_010890 (ligA)
03400 DNA repair and recombination proteins [BR:
paqa03400
]
K9V56_010890 (ligA)
Enzymes [BR:
paqa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K9V56_010890 (ligA)
DNA replication proteins [BR:
paqa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K9V56_010890 (ligA)
DNA repair and recombination proteins [BR:
paqa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K9V56_010890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K9V56_010890 (ligA)
MMR (mismatch excision repair)
DNA ligase
K9V56_010890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K9V56_010890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
DUF4796_N
ELAPOR1_C
Motif
Other DBs
NCBI-ProteinID:
WIV99932
LinkDB
All DBs
Position
2537329..2539452
Genome browser
AA seq
707 aa
AA seq
DB search
MSSTPHDLFSVLPTEAASPTAAVNAAAARAAELRDTLNHHAHLYYVLDAPALPDAEYDKL
FQELQALEAVHPELLTPDSPTQRVIGQVLDGFAPVRHAVPMLSIRTETDTEASGALSFDQ
RVRKQLELDEAAAPVEYAAELKFDGLAINLRYEQGLLVQAATRGDGETGEDVTQNIRTVA
QIPLRLRGVTAPVLEVRGEVYMRRDDFEALNERQRAAGDKTFVNPRNTAAGAVRQLDPAL
AAQRPLSFFAYGLGEVQGWALPPTHSGLLAALAEMGLPVCADRAVVQGAEGLVAFHQAMG
AKRDALPFDIDGVVYKINSLELQQRLGFVSREPRWAVAHKYPAQEQLTRLNDIEIQVGRT
GKLTPVAKLEPVFVGGTTVSNATLHNVFELRRKGVRIGDQVIVRRAGDVIPEVVGRLAQA
RASYVPNFRMPRSCPVCGSEALRERGGMDYRCSGGISCPAQRKQALLHFASRRAVDIEGL
GDKLVDQLVDAGIVLSLPGLYKLGVAKLAALDRMAEKSAQNIVDALEKSKRTTLARFLFG
LGIRQVGETTAKDLARHFGRIDALMDASVEQLLQVRDVGPIVAQSIHTFFAQPHNREVVE
QLRAAGLSWDEGEGAAAQTGLQPLAGKTLVLTGTLPTLSRDAAKDLIEAAGGKVSGSVSK
KTHYVVAGEEAGSKLDKARELGVTVLDEAGLQALLQASPAGEPTRSD
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgagttccacgccccacgatctgttttccgtgctgcccaccgaggcagccagccccacc
gccgctgtcaatgcagcggccgcccgcgctgctgaactgcgcgacacgctgaaccaccat
gcccacctctactacgtgctcgatgcgccggccttgcccgatgccgagtacgacaagctc
ttccaggagctgcaggcgctggaggcggtccaccccgagctgctgacgcccgattcaccc
acacagcgggtgatcggccaggtgctggacggctttgcgccggtgcgccatgccgtgccc
atgctctccatccgcaccgagaccgacaccgaggcctcgggcgcgctcagcttcgaccag
cgcgtgcgcaagcagctggagctggacgaggcggccgcgccggtcgagtacgcggccgaa
ttgaagttcgacggcctggccatcaatctgcgctacgagcagggcctgctggtgcaggca
gccacgcgcggcgacggcgagaccggcgaggacgtgacccagaacatccgcaccgtggcc
cagatcccgctgcgcctgcgtggcgtcacggcgccggtgctcgaggtgcgcggcgaggtg
tacatgcgccgcgacgatttcgaggctttgaatgagcgccagcgcgccgccggtgacaag
accttcgtcaacccgcgcaacaccgccgccggtgcggtgcgtcagctcgacccggccctg
gcggcgcagcggccgctgagcttttttgcctacggcctgggcgaggtgcagggctgggcc
ctgccgcccacgcacagcggcttgctggctgccctggccgagatgggcctgccggtctgc
gccgaccgggcggtggtgcagggcgccgaaggcctggtggcctttcatcaagccatgggt
gccaagcgggatgccctgcctttcgacatcgacggcgtggtctacaagatcaacagcctg
gagcttcagcagcgcctgggctttgtcagccgcgagccgcgctgggccgtggcccacaaa
tacccggcgcaggagcagctgacgcggctgaacgacatcgagatccaggtcggccgcacc
ggcaagctcacgccggtggccaagctggagccggtgttcgtggggggcaccacggtgtcc
aacgcgactttgcataacgtcttcgagctgcggcgcaagggcgtgcgcatcggtgaccag
gtgatcgtgcgccgcgcgggcgatgtgatccccgaggtggtcggtcgcctggcccaggcc
cgcgccagctatgtgcccaatttccgcatgccacgcagctgcccggtctgcggcagcgag
gcgctgcgcgagcgcggtggcatggactaccgctgcagcggcggcatctcctgcccggcc
cagcgcaagcaggccctgctgcatttcgccagccggcgtgcggtggacatcgagggtctg
ggcgacaagctggtcgaccagctcgtcgatgccggcatcgtgctgagcttgccgggcctg
tacaagctcggcgtggccaagctggccgcgctggaccgcatggctgaaaagagcgcccag
aacatcgtcgacgcgctggagaaaagcaagcgcacgaccttggctcgatttctgtttggc
ctgggcatccgccaggtcggcgagaccacggccaaggacctggcccgccatttcggccgc
atcgatgccttgatggacgccagcgtcgagcagttgctgcaagtccgcgatgtcggcccc
atcgtggcccagagcatccacaccttctttgcccagccgcacaaccgcgaggtggtcgag
cagctgcgcgcggccggcctcagctgggatgagggcgagggtgcggccgcccagaccggc
ctgcagcccctggccggcaagaccctggtgctgaccggcaccttgccgaccttgtcgcgc
gacgcggccaaggacttgatcgaggccgctggtggcaaggtcagcggctcggtgtccaag
aagacccactatgtggtcgcgggtgaagaggccggctccaagctggacaaggcgcgagag
ctcggggtgacggtgctggacgaggcgggcctgcaggccttgctgcaagcctcgccggca
ggcgagccgacccgctcagactga
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