Phreatobacter aquaticus: E8L99_10185
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Entry
E8L99_10185 CDS
T09827
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paqt
Phreatobacter aquaticus
Pathway
paqt03030
DNA replication
paqt03410
Base excision repair
paqt03420
Nucleotide excision repair
paqt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paqt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E8L99_10185 (ligA)
03410 Base excision repair
E8L99_10185 (ligA)
03420 Nucleotide excision repair
E8L99_10185 (ligA)
03430 Mismatch repair
E8L99_10185 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paqt03032
]
E8L99_10185 (ligA)
03400 DNA repair and recombination proteins [BR:
paqt03400
]
E8L99_10185 (ligA)
Enzymes [BR:
paqt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E8L99_10185 (ligA)
DNA replication proteins [BR:
paqt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E8L99_10185 (ligA)
DNA repair and recombination proteins [BR:
paqt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E8L99_10185 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E8L99_10185 (ligA)
MMR (mismatch excision repair)
DNA ligase
E8L99_10185 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E8L99_10185 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Zn_ribbon_NUD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QCK86094
UniProt:
A0A4D7QL42
LinkDB
All DBs
Position
2186273..2188420
Genome browser
AA seq
715 aa
AA seq
DB search
MTRTPPPADRPEVATLSADEARADHARLGAAIAEADKLYYEYDAPTLTDADYDQLRRRYE
EIEQLFPELASETSLTRKVGAAPSARFAKVRHAVPMLSLSNAFADEEVFDFVTRIRRFLG
LAADSPVAITAEPKIDGLSCSLRYENGRLTVAATRGDGAEGEDVTANVRTIGELPQVLKG
APEVLEVRGEVYLSHADFRAINARQEEKGLPPFANPRNAAAGSLRQLDPEITRSRPLKFF
AYTWGEILPAVPKDSQTGMIGWFRELGFPVNPLTVRCDSAEALLAHYRGIEAQRATLGYD
IDGVVYKVDSLDLQRRLGFVSRSPRWAIAHKFPAEKATTVLEAIEIQVGRTGALTPVAKL
RPVTVGGVVVSNATLHNEDYIKGVGADGQPIRTADIRVGDTVTIQRAGDVIPQVLDVVMD
QRPADSRAYVFPNTCPACGSPAVREEGEAVRRCTGGFACPAQTVERLRHIVSRRVLDIEG
LGAERLPLFMDDPDLPIHEPADIFTLAKRDAGNLKKLKDKEGFGALSVKNLFEAIEKSRT
VALDRLIAALGIRHVGETTARVLARAYGRWEAFHDAAVKLSEGDEEARHELDALDQIGDA
VIEAIANYFREPRNRAMVERLVAELTIQEAEKPKTDTAIAGKTVVFTGALEKMTRDEAKA
MAERLGAKVAGSVSKKTDYVVAGPGAGSKLDKARDLGVAVMTEDEWFVLAGASPS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaccagaacgcccccgcccgccgatcgccccgaggtcgcaacgctgtcagccgatgaa
gcgcgcgccgaccatgcccgcctcggcgcggccatcgccgaagccgacaagctctattat
gagtacgacgcaccgaccctcacggatgcggattacgaccagctgcgccgccgctacgag
gagatcgagcagctcttccctgaactggcgagcgagaccagcctgacccgtaaggtcggc
gcggcgccgtccgcccggttcgccaaggtccgccacgcggtccccatgctgtccttgtcg
aatgccttcgccgacgaggaggtgttcgatttcgtcacccgcatacgccgcttcctcggc
ctcgccgccgattcgcccgtcgccatcaccgccgaaccgaagatcgatggcctgtcctgc
tcgctgcgctacgagaacggcaggctcaccgttgccgccacccgcggcgacggcgccgag
ggcgaggatgtcacggccaatgtccgcaccattggcgaactgccgcaggtgttgaagggc
gcgccggaggttctggaagtgcgtggcgaggtctatctgagccatgccgatttccgcgcc
atcaatgcgcgccaggaggagaagggcctgccgcccttcgccaatccgcgcaatgccgcc
gccggctcgttgcgccagctcgaccccgagatcacccgctcccgtccgctgaaattcttc
gcctatacctggggcgagatcctgccggccgtgccgaaggacagccagaccggcatgatc
ggctggttccgcgagctgggctttccggtcaatccgctcaccgtgcgctgcgacagcgcc
gaggccttgctggcccattaccgcgggatcgaggcgcagcgggccaccctcggctacgac
atcgacggcgtcgtctacaaggtcgattcgctggacctgcagcgccggctcggcttcgtc
tcccgctcgccgcgctgggccattgcccacaagttccccgccgagaaggcgacgacggtt
ctcgaggcgatcgagatccaggtcggccgcaccggcgcgctgacaccggtcgccaagctc
cgcccggtcaccgtcggcggtgtggtcgtgtcgaacgcgaccctgcataacgaggattat
atcaagggcgtcggcgccgatggccagcccatccgcacggccgatatccgcgttggcgat
accgtgacgatccagcgggccggcgacgtcattccccaggttctcgacgtcgtcatggac
cagaggcctgcggattccagagcctatgtcttcccgaacacctgtcccgcctgcggcagc
cctgccgtgcgcgaggagggtgaggctgtccggcgttgcaccggcggctttgcctgcccg
gcccagacagtcgagcgcctgcgccacatcgtctcgcgccgtgtgctcgatatcgagggc
ctgggcgccgagcggctgcccctcttcatggacgatcccgatctgccgatccacgagccc
gcggatatcttcacgctggcaaaacgggacgccggcaacctgaagaagctgaaggacaag
gagggcttcggcgctctgtcggtcaagaacctgttcgaggcgatcgagaagagccgcacc
gtcgccctcgacaggctgattgcggcgctcggcatccgccatgtcggtgagaccaccgcc
cgggtccttgcccgtgcctatggccgctgggaggccttccacgatgccgccgtgaagctc
tcggaaggcgacgaggaagcccgtcacgaactcgacgcgctcgaccagatcggtgacgcc
gtgatcgaggccatcgccaactatttccgcgagccgcgcaaccgcgccatggtcgagcgg
ctggtggccgaactgaccatccaggaggccgagaagccgaagaccgacaccgccattgcc
ggcaagaccgtcgtcttcaccggcgcgctggagaagatgacgcgcgacgaggccaaggcc
atggcggaacggctgggtgcgaaagttgcgggctcggtatcaaaaaagaccgactatgtc
gtggctggtccgggcgccggatcgaagctcgacaaggcgcgtgaccttggtgtcgcagtc
atgaccgaagacgagtggttcgtgctcgccggcgcatcaccgagctga
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