Psychrobacter arcticus: Psyc_0320
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Entry
Psyc_0320 CDS
T00256
Symbol
lig
Name
(GenBank) probable NAD dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
par
Psychrobacter arcticus
Pathway
par03030
DNA replication
par03410
Base excision repair
par03420
Nucleotide excision repair
par03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
par00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Psyc_0320 (lig)
03410 Base excision repair
Psyc_0320 (lig)
03420 Nucleotide excision repair
Psyc_0320 (lig)
03430 Mismatch repair
Psyc_0320 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
par03032
]
Psyc_0320 (lig)
03400 DNA repair and recombination proteins [BR:
par03400
]
Psyc_0320 (lig)
Enzymes [BR:
par01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Psyc_0320 (lig)
DNA replication proteins [BR:
par03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Psyc_0320 (lig)
DNA repair and recombination proteins [BR:
par03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Psyc_0320 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psyc_0320 (lig)
MMR (mismatch excision repair)
DNA ligase
Psyc_0320 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Psyc_0320 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
AAZ18189
UniProt:
Q4FUW9
LinkDB
All DBs
Position
396012..398087
Genome browser
AA seq
691 aa
AA seq
DB search
MTDAISPLTSKDIDTAKPITNDDAIVTQMRTFIDTLKQHNYAYYVLDNPILEDSEYDQLR
RSLLELEEEYPDLVQPDSPINQVGDMPLPAFTQVTHDIPMLSLGNVFEYNDLRDFMRRVN
DRLSVAQQSPEYEMELKLDGLAVSLKYVHGKFTQAVTRGDGQTGEDITQNAKTIRNMPLW
LADAADIELLEVRGEVLMPKAGFERLNRLAAEKEEKTFANPRNAAAGSLRQLDPSVAASR
PLAFYAYSVNQGLLDTIDTQSAALAWIKDIGFSVSAVEVVSNPREAQTYYESIIATRADL
PFEIDGMVIKVNSLALQQQLGFLSREPRWATAYKFPAETVMTRLHAIDWQVGRTGQITPV
GKLEPVKVGGVTVSNVTLHNFGEIQRLDVRAGDMVSVHRAGDVIPKVTRVWHEQRPENSE
PVQLPSTCPVCDSPVVLPKDEALARCTGGLFCPAQQQEALIHFVSRRAMDIDGLGASWLI
SFFEHGLVKTVADIYQLHNHQEELVTLEKLGEKSVQNIISAIEASKHTTLSRFIYALGIR
GVGETTAQNLAQQFGDLDALMSASIEKLLLTPDVGAITAELAYKFFRAPHNIEVITALRE
AGVHWDKVEQVVSEGLPLDGQTWVITGALDSMARDEAKAKLQALGAKVSGSISAKTTALL
AGDKAGSKMAKAEKLGVKVVGEEEFLALVGE
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgctatctcaccgcttacctctaaagacatcgatactgcaaaacctattacc
aatgatgatgctatcgtcactcagatgcgtacgtttatcgatacacttaagcagcataat
tatgcctattatgtgctcgataatcctatcttagaagacagcgaatacgatcaattacgt
cgctctttacttgagcttgaagaagaatatccagacttggtacagcctgacagccctatc
aatcaagtcggtgatatgccgttgcctgcttttactcaagtgacccacgacatcccgatg
ctatcgcttgggaacgtctttgaatataatgatttgcgtgattttatgcgccgcgttaat
gatcgcttaagcgtggctcagcaaagcccagaatatgagatggagctaaagctggatggt
ttggcggtatcactcaagtatgtccacggtaaatttacgcaagcggttacgcgcggtgat
ggtcaaacgggcgaggatatcacccaaaatgccaaaaccattcgcaatatgccgctttgg
ctcgctgatgccgctgacatcgaactgttagaggtgcgcggtgaagtactgatgcccaag
gcaggttttgagcgtctaaatcgcctagcggcagaaaaagaggaaaaaacttttgccaat
ccacgcaatgctgccgctgggagcttacgtcagcttgatccaagtgtagccgccagtcgt
ccgttggcgttttacgcctattcagtcaatcaaggattgcttgacactatcgatactcag
tcagcagcgctcgcatggataaaagatattggctttagcgtcagtgcagtcgaagtggta
tcaaacccacgcgaggctcaaacctattatgagtcaatcattgcaacgcgtgcagatttg
ccgtttgagattgatggcatggtcattaaggtcaatagccttgcattacagcagcagctt
ggctttctatcacgtgagccgcgctgggcaaccgcttataaattccctgccgaaaccgtc
atgacgcgcttgcatgctatcgactggcaagtcggacgtactgggcaaatcaccccagtt
ggcaagcttgagccagtgaaagtcggtggcgttaccgtcagcaatgttaccttgcataac
ttcggtgagattcagcgattggacgtacgtgcaggcgatatggtcagcgtccatcgtgca
ggtgatgtcatccctaaagtgacccgtgtctggcatgagcaacgtccagaaaattctgaa
ccggtacagctgccgtcgacctgtccggtgtgcgactctcctgtggtattgcccaaagat
gaagcattggcacgttgtaccggcggactgttttgtcccgcgcagcagcaagaagcgctc
attcactttgtctcacgtcgagcgatggatatcgatgggcttggtgcgagctggctcatt
agcttctttgagcatggtttggtcaagacggtcgctgatatttatcagttgcacaatcat
caagaagaactggttacgcttgaaaaactaggcgaaaagtcggtgcaaaatatcatcagc
gccattgaagccagtaaacatactacgctatcacgttttatctatgcgctgggtattcgc
ggtgtcggtgagacgacggcgcaaaacctcgcccagcaatttggcgaccttgatgcctta
atgtctgccagtatcgaaaaactgctactcacgccagatgtgggcgctattactgctgaa
cttgcctataaattcttccgcgcaccgcacaatatcgaagtcatcactgcactgcgcgaa
gctggcgtgcattgggataaggtcgagcaagtggtatcagagggcttgccgctcgatggg
caaacgtgggttataaccggcgcacttgatagcatggcacgcgatgaagccaaagcaaaa
ctacaagcgctcggtgccaaagtctccggtagcatctcggcaaaaaccactgcgctacta
gcaggtgataaggctggctcaaaaatggcgaaagcggagaaattgggtgtgaaggtggtg
ggtgaggaagagtttttggcgttggttggggagtag
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integrated database retrieval system
