Paraburkholderia sp. SOS3: BTO02_09765
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Entry
BTO02_09765 CDS
T04966
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
para
Paraburkholderia sp. SOS3
Pathway
para03030
DNA replication
para03410
Base excision repair
para03420
Nucleotide excision repair
para03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
para00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BTO02_09765 (ligA)
03410 Base excision repair
BTO02_09765 (ligA)
03420 Nucleotide excision repair
BTO02_09765 (ligA)
03430 Mismatch repair
BTO02_09765 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
para03032
]
BTO02_09765 (ligA)
03400 DNA repair and recombination proteins [BR:
para03400
]
BTO02_09765 (ligA)
Enzymes [BR:
para01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BTO02_09765 (ligA)
DNA replication proteins [BR:
para03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BTO02_09765 (ligA)
DNA repair and recombination proteins [BR:
para03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BTO02_09765 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BTO02_09765 (ligA)
MMR (mismatch excision repair)
DNA ligase
BTO02_09765 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BTO02_09765 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
APR35655
UniProt:
A0A1L6HWI9
LinkDB
All DBs
Position
1:2142893..2144956
Genome browser
AA seq
687 aa
AA seq
DB search
MARTRSSSPAASAASNAPSERALWLREQLERANYAYYVLDQPELPDAEYDKLFKELEQIE
SEHPDLIVPDSPTQRVGGEVASGFEPVVHDMPMLSLNNGFADEDIAAFDKRVSDALGHTP
VDYACELKFDGLAISLRYEDGTFVQAATRGDGATGENVTENVRTIRSIPLRLKGRHVPKV
LDVRGEVLMFKRDFERLNERQREAGHREFANPRNAAAGSLRQLDPKMTAQRPLSFFAYGI
GVLDGMPMPDTHSALLDWYHEMGLPVNSQRAVVQGAEGLLGFFRKIGEKRDALPYDIDGV
VYKVDRRDEQDRLGFVSRAPRFALAHKFPAQEALTKLVAIDVQVGRTGAITPVARLEPVF
VGGATVTNATLHNEDEVRRKDIRIGDTVIVRRAGDVIPEVVGALVDRRPADAKAFVMPTS
CPVCGSAIERLPGEAIARCSGGLFCPAQRKQALWHFAQRRALDIDGLGEKIIDQLVEQNL
VRTPADLFNLGFATLAALDRFADKSAQNLLDSLEKAKHTTLARFIYALGIRHVGESTAKD
LAKHFGSLDPIMSASVDELLEVNDVGPIVAEAIHQFFAEEHNLTVIDQLRAPGRVTWPEG
PPAPKAPQGVLAGKTIVLTGTLPNLAREEAKEMLEAAGAKVAGSVSKKTDYVVAGTEAGS
KLAKAEELGIPVLDEEGMRKLLERQTI
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctcgaaccaggtcctccagtcccgccgcttccgccgcgtcgaatgctccgtccgag
cgtgcgctgtggctgcgcgagcagctcgaacgcgcgaactacgcgtactacgtgctcgac
cagccggagctgcccgatgcggagtacgacaagctcttcaaggaactcgagcagatcgaa
agcgagcacccggatctgatcgtgcccgactcgcccacgcagcgtgtcggcggcgaagtc
gcaagcggcttcgagcccgtcgtgcacgacatgccgatgctgtcgctgaacaacggcttt
gccgatgaagatatcgccgcgttcgacaagcgcgtgtccgacgcgctcggccatacgccg
gtcgactacgcgtgcgaactcaagttcgatggactcgcgatctcgctgcgctacgaagac
ggcacattcgtgcaagcggccacgcgcggcgatggcgcgaccggcgagaacgtcacggaa
aacgtgcgtacgatccgttcgattccgctcaggctcaaaggccgtcatgtgccgaaggtg
cttgacgtgcgcggcgaagtgctgatgttcaagcgcgacttcgagcgtctgaacgaacgc
cagcgcgaggcgggccaccgcgaattcgccaatccgcgcaatgcggcggccgggagtttg
cggcaactcgatccgaaaatgacggcgcagcggccgctgtcgtttttcgcgtacggcatc
ggcgtgctcgacggcatgccgatgcccgacacgcatagcgcgctgctcgactggtatcac
gagatgggcctgccggtgaatagccagcgcgcggtcgtgcagggtgcggaaggactgctc
ggttttttccgcaagatcggcgagaagcgcgatgcgctgccgtacgacatcgacggggtc
gtctacaaggtcgatcgccgcgacgagcaggacaggctcggtttcgtctcgcgcgccccg
cgttttgcgctggcgcacaaatttcccgcgcaggaggcgctgacaaaacttgtcgcgatc
gacgtgcaggtcggccgtaccggcgcgattacgccggtcgcgcggctcgagcccgtgttc
gtcggcggcgccacggtcaccaatgcaacgctgcacaacgaagacgaggtgcgccgcaag
gatatccgcatcggcgacacggtgatcgtgcggcgtgccggcgatgtgattcccgaagtg
gtcggcgcgctcgtcgaccggcggccggcggatgcgaaggcgttcgtgatgccgacctcg
tgcccggtctgcggctcggccatcgaacgcctgcccggcgaggcgattgcgcgttgcagc
ggaggcctcttctgccccgcgcagcgcaagcaggcgttgtggcatttcgcgcagcgccgt
gcgctcgatatcgacggactcggcgaaaagatcatcgaccagctggtcgagcagaacctc
gtgcgcacgccggcggacctcttcaatctcggcttcgcgacgcttgccgcgctcgaccgt
tttgccgacaagtcggcgcagaatctgctcgattcgctcgaaaaggccaagcatacgacg
ctcgcgcgatttatctacgcgctcggtatccggcatgtcggcgaatcgaccgcaaaagac
cttgcgaagcatttcggttcgctcgatccgatcatgagcgcgagcgtcgacgaactgctc
gaggtcaacgatgtcggtccgatcgtcgccgaagcgattcaccagttcttcgctgaagag
cacaaccttacggttatcgatcaactgcgcgcaccgggcagggtaacgtggcccgaaggc
ccgccggcgccgaaggcgccgcaaggcgtgctggccggcaagacaatcgtgctgacgggc
acgctgccgaatctcgcgcgcgaagaagcgaaggaaatgctcgaggcggccggcgcaaaa
gtggccggttcggtgtcgaagaaaacggactatgtggtggcgggcacggaagcgggcagc
aagctcgcaaaagccgaggaacttggcattcccgtactcgacgaagagggtatgcgcaag
ctactggagaggcagacaatatga
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