Polynucleobacter arcticus: DN92_07375
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Entry
DN92_07375 CDS
T09901
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pard
Polynucleobacter arcticus
Pathway
pard03030
DNA replication
pard03410
Base excision repair
pard03420
Nucleotide excision repair
pard03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pard00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DN92_07375 (ligA)
03410 Base excision repair
DN92_07375 (ligA)
03420 Nucleotide excision repair
DN92_07375 (ligA)
03430 Mismatch repair
DN92_07375 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pard03032
]
DN92_07375 (ligA)
03400 DNA repair and recombination proteins [BR:
pard03400
]
DN92_07375 (ligA)
Enzymes [BR:
pard01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DN92_07375 (ligA)
DNA replication proteins [BR:
pard03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DN92_07375 (ligA)
DNA repair and recombination proteins [BR:
pard03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DN92_07375 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DN92_07375 (ligA)
MMR (mismatch excision repair)
DNA ligase
DN92_07375 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DN92_07375 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
STAR_dimer
Motif
Other DBs
NCBI-ProteinID:
QKM60864
UniProt:
A0A6M9PFK9
LinkDB
All DBs
Position
complement(1451518..1453533)
Genome browser
AA seq
671 aa
AA seq
DB search
MSFSSPTNLADRYAFLQVELARLEHAYYVLDNPIVPDSEYDRLYRELLDIEAEHPEWVTA
DSLSQRVGGAALKEFNSVTHAVPMLSLNNAFEDVELIAFDRRCREGLHVDQVDYAGELKF
DGLAISLRYEHGSLVRAATRGDGASGEDVTANIKTIRAIPLKLSGDDIPEVLEVRGEVFM
YLKDFQKMNEQAAAKGEKEFANPRNAAAGSLRQLDSKITAKRPLSFFSYGLGVLEPQSWL
PKTHEQLLNAYVKLGLPVCTERRVLKSVEEILAFYNEVGTKRDSLPYDIDGVVYKVNSFA
EQAKLGYVSRAPRFALAHKFPAQEALTTVLGIDVQVGRTGAITPVARLAPVEVGGVTVTN
ATLHNEDEVKRKDVRIGDTVSVRRAGDVIPEVVAVLKERRPANATEFVMPTHCPVCDSHI
ERLADEAIARCSGGLFCGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDHNLVRTPADLY
RLGFTAIANLERMGEKSADNLIAAINQSRNTTLARFIFALGIRHVGETTAKDLANHYRSM
YALMDANLEDLLTVKDVGPVVADSITSFMEEAHNREVIEQLLVSGMQLSVEEKVISAAVA
GKTFVLTGTFPTMTRDEAKDLLEKAGAKVAGSVSKKTDYVVAGTDAGSKLTKAEQLGIQV
IDEAAMMELLK
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
ttgtcgttctctagtccgacaaatttagcggatcgctacgcattcttacaagtcgaattg
gcacgcctagagcatgcctactatgtgctcgataaccccatcgttcctgatagcgagtat
gaccgcctctatcgcgagttactcgacattgaggctgaacatcctgagtgggtaactgct
gattcactatcgcaaagagtgggcggtgctgctctcaaggagtttaattcggtcactcat
gcagtgccgatgctttctttgaataatgcctttgaagacgtcgagctgattgcatttgat
cgtcgttgtcgtgagggcctgcatgtcgaccaagtagattacgcgggcgaactcaaattt
gatggcttagcgatctcacttcgttatgagcatggttctttagtcagagcagctacgcgt
ggtgatggcgctagtggtgaagatgtcactgccaatatcaaaaccattcgggctattcca
ctcaagctctctggggatgatattcctgaggtcttggaagtgcgcggggaagtctttatg
tatctcaaagacttccaaaaaatgaatgagcaagctgcagccaaaggcgagaaagaattc
gctaaccctcgcaatgctgctgcaggtagtttgcgtcaactggattcaaagatcaccgcc
aagagaccgctctcattcttctcttatggcttaggcgtactagagcctcaatcttggtta
ccaaaaacccatgaacagcttctcaacgcctatgtaaagctaggcttgccagtttgcaca
gagcgccgtgttctcaaatccgtagaagagatattggctttctataatgaggttggcaca
aagcgagactcattgccatatgacattgatggtgtggtctataaggttaactcctttgcg
gagcaagccaagctagggtatgtatccagagccccacgctttgctttagcccataagttc
ccagcacaagaagccttaactaccgttctcggaattgatgtgcaagtagggcgcactggc
gctattactccagttgcaagacttgctcctgtggaagtgggtggcgttaccgtgaccaac
gctactctacacaatgaggatgaagtcaagcgtaaagatgttcgcatcggcgataccgtt
tcagtcagaagggcaggggatgtcattccggaagtagttgcggtgctgaaagagcgtaga
ccagccaatgcaacagaattcgtcatgccaacacattgtccggtatgcgattcacatatt
gagcgcttggcggatgaagcgattgcccgttgtagtggtgggctattttgcggagcgcag
cgcaaacaggcattaatacattttgcccacagaagagccttagatattgaaggtttgggc
gagaagatcgtggatcagttagtcgatcacaatctcgtcagaacgccagctgacctctat
cgtcttggctttaccgcaatagccaatctggagcgtatgggcgagaagtcagccgacaat
ttgattgcagcaatcaatcaatccagaaataccaccttagccagatttatctttgcattg
ggtattcgtcatgtgggcgagactaccgccaaggatttggcaaatcactatcgatctatg
tatgccctgatggatgcaaatttagaagacttgctaacagtaaaagatgttggcccagta
gtggcagactctattacgagctttatggaagaagcccataaccgagaagtgattgagcaa
ctcttagtctcggggatgcaactctccgtagaagaaaaggtgatcagcgcagcagttgca
ggtaaaacgttcgtactaacaggcacattcccgaccatgacaagggatgaagccaaagat
ctgcttgaaaaagcaggcgctaaagtagccggctccgtctccaagaaaaccgactatgtt
gttgctggtacagatgctggaagtaaactcactaaagctgaacagctaggcatccaagta
attgatgaagcagccatgatggagttattgaagtag
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integrated database retrieval system
