Priestia aryabhattai: I5S86_03380
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Entry
I5S86_03380 CDS
T07135
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
parh
Priestia aryabhattai
Pathway
parh03030
DNA replication
parh03410
Base excision repair
parh03420
Nucleotide excision repair
parh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
parh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I5S86_03380 (ligB)
03410 Base excision repair
I5S86_03380 (ligB)
03420 Nucleotide excision repair
I5S86_03380 (ligB)
03430 Mismatch repair
I5S86_03380 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parh03032
]
I5S86_03380 (ligB)
03400 DNA repair and recombination proteins [BR:
parh03400
]
I5S86_03380 (ligB)
Enzymes [BR:
parh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I5S86_03380 (ligB)
DNA replication proteins [BR:
parh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I5S86_03380 (ligB)
DNA repair and recombination proteins [BR:
parh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I5S86_03380 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I5S86_03380 (ligB)
MMR (mismatch excision repair)
DNA ligase
I5S86_03380 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I5S86_03380 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_DNA_ligase
DNA_ligase_aden
HHH_5
HHH
RNA_ligase
DUF3701
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QPN45960
LinkDB
All DBs
Position
complement(736121..737824)
Genome browser
AA seq
567 aa
AA seq
DB search
MSPFLRLAALLLLHTSIAQAGHCPDWDAKQARTEVAQLRTTLANWDDHYHRQGIALVADE
LYDQARHHLLHLQQCFGLEPTGPSPLASARGPIAHPVAHTGVEKLPDAAGVARWMTGKKG
VWVQPKVDGVAVSLVYRQGRLVQLLSRGDGRQGHDWSRHIKDLDSITRQLPQPLDVVLQG
ELYLRLQAHVQAEAGSSNARGSVAGMLARKQLGPKLGASIGLFVWDWPHGPDNQGERLTQ
LAAWGFPDSQRFSTAIDTPAQATHWRLHWYRSPLPFATDGVILRQDSRPPAARWRPNAPY
WIAAWKYPFAQALAEVRDVHFLIGRTGRVTPVLKLQPVTLDDRRISQVSLGSMARWQTLD
IRPGDRVAISLAGLTIPRFEKVVHRAVERQPLTVPVPGRYGPHSCWQAGEGCEEQFIARL
AWLGGKQGLAMPGAGPGTWRLLVHAGLVTSLTDWLALDAQQLQQVPGISEVKAMRLQRGF
DIARSRPFAHWLRGLGVPAHGNVPEHEYWPALASRSPSEWQALPGIGETRARQLADFFAQ
GEVQRIATHLGNNGVDGFHMAEEAKSH
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtcacctttcctgcgcctcgccgccctgttgctgctccacacatccatcgcccaagcc
ggccactgtccagactgggatgccaagcaagccagaaccgaagttgcacaactgcgcacc
accctggccaactgggacgaccattaccaccgccagggtatagcgctcgtagccgatgag
ctctacgaccaggcccgacaccacctgctacacctgcaacagtgctttggcctggaaccc
acaggcccaagcccactggccagcgcacgcggcccaattgcccaccccgttgcccacact
ggcgtcgagaaactccctgacgcagctggcgttgcacgctggatgaccggcaagaagggc
gtgtgggtgcaaccgaaagtcgacggagtggcggtctcgctggtctatcgccaaggccgg
ctggtacagctgctcagccgcggtgatggccgccaagggcatgactggagccgccacatc
aaggacctcgacagcatcacccggcaattgcctcagccgctggacgtcgtattgcaaggc
gagttgtacctacgcctgcaagcgcacgtgcaagctgaggcaggcagcagcaatgcgcgc
ggtagcgtggccgggatgctggcgcgcaagcagcttggcccgaaactgggcgcgagcatc
ggcctgttcgtctgggactggccgcatgggcctgacaaccagggcgagcgcctcacacaa
cttgcagcctgggggttccccgacagtcagcgtttcagcacagctatcgacacccccgcg
caagctacccactggcgcctgcactggtatcgctcaccgctgccctttgccaccgacggc
gtgattctgcgccaggacagccgcccgccagccgcccgctggcggcccaacgccccctat
tggatcgccgcgtggaaataccccttcgcccaggcgctggcagaggtgcgcgacgtacac
tttctaatcggccgcaccggcagggtgacgccagtgctcaagctgcagccggtcaccctg
gacgaccgccggatcagccaagtcagcctcggctccatggcccgctggcaaaccttggac
attcgcccaggcgaccgggtggcgatcagcctagccgggctgaccattccacgtttcgaa
aaggtggtacaccgcgctgtcgagcgacaaccgctgacggtacctgtacctggaagatac
ggtcctcacagttgctggcaagccggcgaggggtgtgaagagcagttcatcgcccgcctg
gcctggctcgggggcaagcaagggctggccatgccaggcgccggcccgggcacctggcgg
ctgctggtgcacgcgggcctggtcacatcgctgacggactggttggcgctcgatgcccag
caactgcaacaagtgccgggcatcagtgaagtcaaagccatgcggctgcaacgcggtttc
gacattgcccgctccaggcctttcgcccattggctgaggggccttggcgtgcctgcccac
ggcaacgtgcctgagcatgagtactggccggcgcttgccagccgttcccccagcgaatgg
caagccttgcccggcataggcgaaacacgcgccaggcagctcgcagacttcttcgcccag
ggagaagtacagcgcattgcaacacatctggggaacaatggcgtcgacggttttcacatg
gctgaagaggccaaatcccactag
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