Parasphingorhabdus cellanae: J4G78_03450
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Entry
J4G78_03450 CDS
T07111
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
parj
Parasphingorhabdus cellanae
Pathway
parj03030
DNA replication
parj03410
Base excision repair
parj03420
Nucleotide excision repair
parj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
parj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4G78_03450 (ligA)
03410 Base excision repair
J4G78_03450 (ligA)
03420 Nucleotide excision repair
J4G78_03450 (ligA)
03430 Mismatch repair
J4G78_03450 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parj03032
]
J4G78_03450 (ligA)
03400 DNA repair and recombination proteins [BR:
parj03400
]
J4G78_03450 (ligA)
Enzymes [BR:
parj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J4G78_03450 (ligA)
DNA replication proteins [BR:
parj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J4G78_03450 (ligA)
DNA repair and recombination proteins [BR:
parj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J4G78_03450 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4G78_03450 (ligA)
MMR (mismatch excision repair)
DNA ligase
J4G78_03450 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4G78_03450 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QTD57687
LinkDB
All DBs
Position
complement(689299..691359)
Genome browser
AA seq
686 aa
AA seq
DB search
MRLAKTIAKHNRLYHAEDMPEIADAEYDALVRRNNELEEAFPHLVRDDSPHKLVGAAVAN
SPLSKVAHEQRMMSLDNGFSDEDIAEWLARVRRFLNLPEDEMVAVTAEDKIDGLSCSLRY
EKGELVLAATRGDGQIGEDVTANVRMIADIPHTLAGKVPDVFEIRGEVYMAKSDFEGLNA
RLMDEGKADAAAKNLDFDPGKIRQFANPRNAAAGSLRQKDANITAKRPLKFWAHGWGVAS
AVPGETAFDVMTAIESWGLPLSPLVKRFETLEQMLDHYRHIEMERADLPYDIDGVVYKVD
RLDWQQRLGFVAKAPRWALAHKFPAEQAQTTLESIDIQVGRTGKLTPVGRLKPVTVGGVV
VSNVTLHNRDEIERLGVRPGDRVLVQRAGDVIPQVAENLTRDEDRQPYIFPDHCPKCNSE
AVAEEGEVDVRCTGGLICPAQRFQRLAHFASRAALDIDGLGEKSIAEFIEAGFIESPADI
FRLHQHREEILARDGWQDKSVDNLLAAVEKKRSADAARLLFGLGIRHIGTVTARDLMKNF
TTLPKLAEIGMAARDNEAVRDEVTEIDGVGPTVAQALADFFHEPHNREVWEDLLSEVTPP
DYIVETRDSAVAGKTVVFTGKLETMSRDEAKAQAEALGAKASGSVSAKTDLLVAGPGAGS
KMKKAAELGIEVIDEAAWADIVKAAG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcgcaaaaaccatcgcgaagcataacaggctctatcacgctgaagatatgccg
gaaattgcggacgcagaatatgatgcgttggtgcggcggaataatgagctggaagaggcg
tttccgcatctggtgcgggatgatagcccgcacaagctggtcggtgcggcggtggccaat
tcgccgctgtcaaaagtggcgcatgaacagcgtatgatgagcctcgataacggtttctcg
gatgaagatatcgcggaatggctggcgcgggtgcggcggtttttgaatctgccagaggat
gaaatggttgcggtcacggcggaggataagatcgatggtctttcctgctcgcttcgttac
gagaaaggcgaactggtcctggctgctacgcggggcgatggccagattggtgaggatgta
acggccaatgtccgaatgatcgccgacattccccacaccttagccggtaaagtgccggat
gtctttgaaattcgcggagaggtctacatggccaagagcgattttgaaggccttaacgcg
cgcttgatggatgagggcaaggcagatgctgcggcgaaaaatttagatttcgatccggga
aaaattcgccaatttgccaaccccaggaacgcagcagcgggttcgttgcggcaaaaggat
gcgaatatcaccgccaagcgtccgctgaaattttgggcgcatggatggggcgtggcaagt
gcggtacctggcgagacggcttttgacgtcatgacggcaattgagagttggggtctgccg
ctatcgccgctggtcaagcggtttgaaacgctggagcagatgctggatcactatcggcat
attgagatggaacgcgcagacctgccttatgatatcgatggggttgtttacaaagtcgat
cggctcgattggcagcaaaggctgggctttgttgccaaggcaccgcgctgggccctggcg
cataaatttccagcggagcaggcgcagacgacgttggaaagtatcgatatccaagtgggg
cgcactggcaaattaacgccggttggacggcttaaaccggtcacggtcggcggcgtggtc
gtgtccaatgtgacgctgcacaaccgtgacgaaatcgaacgtctcggtgtgcgtcctggc
gaccgggtattggtccaacgggcaggtgatgtcattccgcaagtggctgaaaaccttaca
cgcgacgaagatcgtcagccctatattttcccggaccattgcccgaagtgcaatagcgag
gccgtcgcggaagagggcgaagtggatgtccgctgcaccggcggcttgatctgtccggcg
cagcgatttcagcgactggcccattttgcatcgcgggccgcgcttgatattgacgggctg
ggcgaaaagagcatcgcggaatttatcgaagcgggctttattgaaagccccgcagatatt
ttccgcctgcaccagcatcgcgaagagattttggcgcgggatggctggcaggataagtct
gtggataatttgttggcggcagtggaaaagaaacgctctgccgatgcggcgcggctgctc
ttcggtctcggcatccgtcatattggtacggtaacagcccgtgatttgatgaagaatttc
acaacactcccgaaattggccgaaatcggaatggcagcgcgtgacaacgaagctgtgcgt
gacgaggtaaccgagattgatggggtaggaccgacggtagcgcaggcgttggccgatttt
ttccacgagccgcataatcgcgaagtttgggaggatctgctgagtgaggtcacgccgccc
gattatattgtcgagacacgggatagtgccgttgccggcaagactgttgttttcactggc
aaactggaaactatgagccgcgacgaagccaaggcacaggccgaagctctgggagccaaa
gcctccggttctgtcagcgcgaagaccgacttacttgtcgccggacccggcgcgggatca
aaaatgaagaaggccgcggaactcggtattgaagtgatcgacgaagcagcgtgggcggat
attgtgaaagcggccggataa
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