Paralcaligenes sp. KSB-10: LSG25_09645
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Entry
LSG25_09645 CDS
T07761
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
park
Paralcaligenes sp. KSB-10
Pathway
park03030
DNA replication
park03410
Base excision repair
park03420
Nucleotide excision repair
park03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
park00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LSG25_09645 (ligA)
03410 Base excision repair
LSG25_09645 (ligA)
03420 Nucleotide excision repair
LSG25_09645 (ligA)
03430 Mismatch repair
LSG25_09645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
park03032
]
LSG25_09645 (ligA)
03400 DNA repair and recombination proteins [BR:
park03400
]
LSG25_09645 (ligA)
Enzymes [BR:
park01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LSG25_09645 (ligA)
DNA replication proteins [BR:
park03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LSG25_09645 (ligA)
DNA repair and recombination proteins [BR:
park03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LSG25_09645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LSG25_09645 (ligA)
MMR (mismatch excision repair)
DNA ligase
LSG25_09645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LSG25_09645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
UHL66091
LinkDB
All DBs
Position
complement(2126581..2128641)
Genome browser
AA seq
686 aa
AA seq
DB search
MTIQQELETLRQTIAQHNRRYYVLDAPIVSDAEYDRLMAELLAIEQAHPELVIPESPSQR
VGGAPLSAFTTVRHAVPMLSLGNAFAPEDVQAFDKRVSDTLRESGLLDADGLVEYVAEFK
FDGLAISLRYEQGRLVQAATRGDGRTGEDVTSNIRTLRSVPLKLGGDYPDVLEVRGEVLI
NRKDFERLNLAQQERGEKVFVNPRNAAAGSLRQLDPRITATRPLRFFAYGWGDIQGMRRA
QAQLFDGAARAATAPKATHAEMLSWFEQLGLPVNQSRQVLKGAAGLLGFYAEVGRRRVDL
PFDIDGVVYKVNALEAQEVLGHVARAPRFAIAHKFPAQEETTTLLGIEVQVGRTGAITPV
ARLKPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVGPVPELRPAGTT
LFVMPKVCPVCGSAIERPEDEAISRCTGGLFCAAQRKQSVIHAAGRKALDIEGLGEKLVD
QLVDSGRIKSLADLFSLDADELAQYERMGRKSAENLVQAIGKARTPALGRLLFALGIRHV
GETTARDVARHFGSMEAIMAADEDSLLTVNDVGPVVAHSILRFFAEAHNREIVQALVAAG
VRPQAAEQPTGQRLSGKTLVLTGALPTWSRDDATRRILAAGGKVSGSVSKKTSYLVAGDD
AGSKLVKARELGVTVIDEAGLIALLG
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacaatacaacaggaactcgaaacactgcgtcaaacgatagcgcaacataatcgtcgt
tattatgtactcgatgcgccgattgtttccgacgccgagtacgaccgcctgatggccgaa
ctgctcgccatcgagcaggctcatcctgaactggtcatacccgagtcgccgtctcaacgg
gtcggcggcgcacccttgtccgcttttacgacggtgcggcatgccgtgcccatgctttcc
ctgggtaatgcgtttgcgccggaagacgtgcaggccttcgacaagcgagtcagcgatact
ttgcgcgaatcgggcctgctggatgccgacggactggtggagtatgtggcggagttcaag
ttcgatggcctggccatcagcttgcgctacgagcaagggcgccttgtacaggcggccact
cgcggcgacggccggactggtgaagatgtcaccagcaatatccgcaccctgcgttccgtt
ccactgaagctggggggtgattatcccgatgtgctcgaagtgcgcggcgaagtgcttatc
aaccgcaaggatttcgaacgactgaacctcgcgcagcaagagcgcggcgagaaggttttt
gtcaatccccgcaatgcggcggcggggagcctgcgtcaactcgatccgcgcattaccgcc
acgcggcccttgcgtttttttgcctatggctggggtgacatacagggcatgcggcgcgct
caggcccaactgttcgatggcgcggcgcgtgccgcaacggcccccaaggcgactcacgcg
gaaatgctgagctggttcgagcaattgggcctgcccgtgaatcagtccaggcaagtgctc
aaaggcgccgcgggcttgctcgggttttacgccgaggttggccggcggcgtgtcgacctg
cccttcgacatcgacggagtcgtgtacaaagtcaacgcgctcgaagcccaggaagtgctt
ggccatgtggcccgcgcgccgcgttttgccatcgcgcataagtttccggcccaggaagaa
accacgacgttgctgggcattgaagtgcaggtgggacgcaccggggccataacgcccgtg
gcgcgattgaagccggtattcgtgggcggcgtgacggtaaccaatgccaccctgcacaac
gaagatgaagtgcgccgcaaggatgtgcgggtgggcgacacggtcattgtgcgccgtgcc
ggcgatgtgattcccgaagtggtggggccggttccagagctgcgtccggccgggacgacc
ctgtttgtcatgcccaaggtctgtccggtatgcggctcggccatcgaacgccccgaagat
gaagccatatcgcgctgtaccggtggcttgttctgcgcggcccaacgcaaacagagcgtt
attcatgccgcgggccgtaaggccctcgatattgaaggcctgggcgagaagctggtggat
caactggtggacagcggccgcatcaagtcgctggcggatctgttttcccttgatgccgat
gaactggcccagtacgagcgcatggggcggaagtcggctgaaaatctggtgcaggccatc
ggaaaagcccgtaccccggccttggggcggcttttgtttgccctgggtatccggcatgtg
ggggaaaccacggctcgcgatgtggctcgccatttcggctctatggaggcgatcatggcc
gctgatgaagacagcctgctgacggtcaacgacgtgggacccgtcgtggcgcattcgatc
ctgcgtttttttgccgaagcgcataatcgcgaaattgtccaggcactggttgccgccggg
gtaaggcctcaggcggccgagcagccgacgggtcagcgcctgagcggcaaaaccctggtg
cttaccggcgctttgcctacctggtcgcgcgacgatgcgacacgccgcatattggcggcc
gggggcaaggtgagcggctcggtttccaaaaaaaccagctatctggtggccggcgacgat
gccggcagcaagctggtcaaggccagggagttgggcgttactgtcatcgacgaagcaggc
ctgatcgccttgctgggctga
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