Paraconexibacter antarcticus: NBH00_19635
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Entry
NBH00_19635 CDS
T08278
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
parn
Paraconexibacter antarcticus
Pathway
parn03030
DNA replication
parn03410
Base excision repair
parn03420
Nucleotide excision repair
parn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
parn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NBH00_19635 (ligA)
03410 Base excision repair
NBH00_19635 (ligA)
03420 Nucleotide excision repair
NBH00_19635 (ligA)
03430 Mismatch repair
NBH00_19635 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parn03032
]
NBH00_19635 (ligA)
03400 DNA repair and recombination proteins [BR:
parn03400
]
NBH00_19635 (ligA)
Enzymes [BR:
parn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NBH00_19635 (ligA)
DNA replication proteins [BR:
parn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NBH00_19635 (ligA)
DNA repair and recombination proteins [BR:
parn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NBH00_19635 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NBH00_19635 (ligA)
MMR (mismatch excision repair)
DNA ligase
NBH00_19635 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NBH00_19635 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
LysW-like_globular
Surfac_D-trimer
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
UTI63542
LinkDB
All DBs
Position
4013098..4015125
Genome browser
AA seq
675 aa
AA seq
DB search
MPDPKDPQAPPAVKQRIEELAGEVQRLNDAYYAVGDSPLPDAEYDALKDELAALVAEHPE
LEPADSPLGKVNAPSELTGPTVRHARPMLSLGKATTEEQIRAFCERFPGKVFRVSEKLDG
LSLSVVYTGGTLEHVATRGTGEVGELVTEKVRHVVPDLPHAIGEDGRVEVRGEAVMLRSV
WSAYNEAHPDRILTNPRSGAAGTLMQKDPEAAAAAGRLLRFFAFGADRDGAPVDIAALDG
IEDAATVVCPDADAVIAAIEAIGARRDDLDYDIDGAVVRLHDPAEFDAAGFNSAEPRGAI
AFKYPPEERTTKLLAVEWQVGKVGRIAPRARVEPVFVGGVTVENITLHNPRLIRERDLRV
GDTVAVVRRGDVIPFAGRAIVEDRDGSEEEIVPPVDCPSCGTELEIRGTGEERWCTNLQC
PAQITRRLMHWASRPAADMEGVGNVWIEKLADDGVLQTRADFYRLTAEQLMGYERMGEVS
ARNTVDAIERSKGLGLRRALIGLAIPMASDGIAKRLCLAGYERIEDVAAATVAELEAIRD
IGTKVAESLVAFFARETIVTEIAALRELGVHLDVLDEDRPVDVAAAGDSPLKGATVVVTG
AFTHGVTGAKISRPDLTRLVEQAGATASSSVSATTTYLLAGANVGAAKTDKAATLGVEVV
DPDTLWGWLKDAGVA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgacccgaaggacccgcaggccccgccggccgtcaagcagcgcatcgaggagctc
gccggcgaggtgcagcgcctgaacgacgcgtactacgccgtcggcgactcgcccctcccg
gacgccgagtacgacgcgctgaaggacgagctcgcggcgctcgtcgccgagcacccggag
ctcgagcccgccgacagcccgctcgggaaggtcaacgccccgagcgagctcaccggcccg
accgtccgccacgcccgcccgatgctctccctcggcaaggcgacgaccgaggagcagatc
cgcgccttctgcgagcgcttccccgggaaggtcttccgcgtgagcgagaagctcgacggc
ctctcgctgagcgtcgtctacacgggcgggacgctcgagcacgtcgccacgcgcggcacg
ggcgaggtcggcgagctcgtcaccgagaaggtgcgccatgtcgtcccggacctcccccac
gcgatcggcgaggacggccgcgtcgaggtccgcggcgaggccgtcatgctccgctccgtc
tggagcgcctacaacgaggcgcacccggaccggatcctgacgaatccccgcagcggcgcc
gccggcacgctcatgcagaaggatcccgaggcggccgccgccgccgggcgcctgctgcgc
ttcttcgcgttcggcgccgaccgcgacggcgcgccggtcgacatcgccgcgctcgacggg
atcgaggacgcggcgaccgtcgtctgcccggatgcggacgccgtcatcgcggcgatcgag
gcgatcggcgcccgccgcgacgacctcgactacgacatcgacggcgccgtcgtccgcctc
cacgacccggccgagttcgacgcggcggggttcaactcggccgagccgcgtggcgcgatc
gccttcaagtacccgccggaggagcggacgacgaagctcctcgccgtcgagtggcaggtc
gggaaggtcggccggatcgcgccccgcgcccgcgtcgagccggtcttcgtcggcggcgtc
accgtcgagaacatcacgctccacaacccgcgcctcatccgcgagcgcgacctgcgcgtc
ggggacaccgtcgccgtcgtccgccgcggcgacgtcatcccgttcgccggccgggcgatc
gtcgaggaccgcgacggcagcgaggaggagatcgtcccgccggtcgactgcccctcgtgc
gggaccgagctcgagatccgcggcaccggtgaggagcgctggtgcacgaacctgcagtgc
cccgcgcagatcacgcgccggctcatgcactgggcctcgcgcccggccgccgacatggag
ggcgtcggcaacgtgtggatcgagaagctcgccgacgacggcgtcctgcagacccgcgcc
gacttctaccgcctcaccgccgagcagctcatgggctacgagcgcatgggcgaggtctcc
gcgaggaacacggtcgacgcgatcgagcgctccaaggggctcgggctgcggcgggcgctc
atcggcctcgcgatcccgatggcctccgacggcatcgccaagcgcctgtgcctcgccggc
tacgagcggatcgaggacgtcgccgccgcgaccgtcgcggagctcgaagcgatccgcgac
atcggcacgaaggtcgccgagtcgctcgtcgccttcttcgcccgcgagacgatcgtcacc
gagatcgccgcgctgcgcgagctcggcgtccacctcgacgtcctcgacgaggaccggccg
gtcgacgtcgccgccgccggcgactcgccgctgaagggcgcgaccgtcgtcgtcaccggc
gccttcacccacggggtcaccggggcgaagatcagccggccggacctcacgcggctcgtc
gagcaggcgggcgcgaccgcgtcctcctcggtgagcgcgacgacgacctacctcctcgcg
ggcgcgaacgtcggcgccgcgaagaccgacaaggcggcgacgctcggggtcgaggtcgtc
gaccccgacacgctctggggctggctgaaggacgcgggcgtcgcctga
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