Paracoccus sp. Arc7-R13: EOJ32_06885
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Entry
EOJ32_06885 CDS
T06050
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
parr
Paracoccus sp. Arc7-R13
Pathway
parr03030
DNA replication
parr03410
Base excision repair
parr03420
Nucleotide excision repair
parr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
parr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EOJ32_06885 (ligA)
03410 Base excision repair
EOJ32_06885 (ligA)
03420 Nucleotide excision repair
EOJ32_06885 (ligA)
03430 Mismatch repair
EOJ32_06885 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parr03032
]
EOJ32_06885 (ligA)
03400 DNA repair and recombination proteins [BR:
parr03400
]
EOJ32_06885 (ligA)
Enzymes [BR:
parr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EOJ32_06885 (ligA)
DNA replication proteins [BR:
parr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EOJ32_06885 (ligA)
DNA repair and recombination proteins [BR:
parr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EOJ32_06885 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EOJ32_06885 (ligA)
MMR (mismatch excision repair)
DNA ligase
EOJ32_06885 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EOJ32_06885 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Zn_ribbon_PF0610
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AZY95173
LinkDB
All DBs
Position
1367504..1369639
Genome browser
AA seq
711 aa
AA seq
DB search
MDRGQAADRIADLAARVAAANQAYHAEDAPQISDAEYDALKAQLAALERDFPDLALPDSP
TGKVGAAPAEGFGKIVHAQRMMSLGNAFTEGDVADFTARVRSFLGLAPDMPLEVTAEPKI
DGLSLSLRYEDGVLVHAATRGDGVVGENVTANARTISDIPHQLEGDVPAILEVRGEVYMG
HDDFAALNDAGRVFANPRNAAAGSLRQIDPAVTARRPLRFFAYGWGQLSEPLAPTQMASV
ERLAALGFQTNPLTRLCTDTAQMIATWAEIEQQRATLGYDIDGVVYKVNDLAFQGRLGFR
STTPRWALAHKFPAETAWTRLERIEIQVGRTGALSPVARLEPVTVGGVVVSNATLHNEDY
IAGRDNSGAPIRDGRDIREGDWVKIYRAGDVIPKIADVDLSRRPADSVPYVFPSHCPECG
SEAIREPGDSVRRCTGGLICPAQAVEKLKHFVSRAAFDIDGLGAKQIEMFFADDQLPIRE
PADIFTLADRDARNFTKLKNREGFGERSAEKLFAAIEDRRSIPMARLIFALGIRHVGEVA
AATLARHFHDWPALIAAIDGAAREPAFAAPDDKARRAALADSPNWAELTGIDGIGAVLVD
SLVTTFAQPTERASIDRLATLLDIRPVDIANAVQTEISGKTLVFTGTLERMTRAEAKARA
EAMGAKVAGSVSAKTDLLIAGPGAGSKATKAEALGVTVIDEDEWLRIAGAG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcggtcaggccgcggaccgcatcgcggatctggcggcgcgggtcgccgccgcg
aaccaggcctatcacgccgaggacgcaccgcagatatcggacgcggaatacgacgcgctc
aaggcgcagctggcggcgctggagcgggactttcccgacctggcgctgcccgacagcccg
accggcaaggtcggcgccgccccggccgagggcttcggcaagatcgtccacgcgcaacgc
atgatgtcgttgggcaatgcctttaccgagggcgacgtcgccgacttcaccgcccgcgtc
cgcagctttctgggccttgcccccgacatgcccctggaggtgacggccgagccgaagatc
gacggcctgtccctgtcgctgcgctacgaggacggcgtgctggtccatgccgcgacccgc
ggcgatggcgtggtgggagagaacgtgaccgcgaacgcccgcacgatttccgacatcccc
caccaactggagggtgacgtccccgccatccttgaggtgcgcggcgaggtctacatgggg
catgacgactttgcggcgctgaacgatgcggggcgggtctttgccaatccgcgcaacgcg
gccgcgggatcgctgcgccagatcgacccggcggtgaccgcgcgccggccgctgcgcttc
ttcgcctatggctgggggcagctgtccgaaccgctggcgccgacgcagatggcctccgtg
gagcggttggccgctctggggttccaaaccaatccgctgacgcgcctgtgcaccgacacc
gcgcagatgatcgccacctgggccgagatcgaacagcagcgcgccaccctgggctatgac
atcgacggcgtggtctacaaggtgaacgaccttgcgttccagggacggcttggctttcgg
tccaccacgccccgatgggccttggcgcacaagtttccggccgagaccgcctggacccgg
ctggagcggatcgagatccaggtcggacgcacgggcgccctgtcccccgtcgcgcggctg
gaacccgtgaccgtgggcggcgtggtcgtgtccaacgcgacgctgcacaacgaggattac
atcgccgggcgggacaactctggcgcgcccatccgcgacggtcgcgacatccgcgagggg
gactgggtcaagatctatcgcgccggcgacgtgatccccaagatcgccgatgtcgacctg
tcgcgcaggccggcggacagcgtgccctatgtctttccgtcgcactgccccgaatgcggg
tccgaggcgatccgcgagccgggcgacagcgtgcgccgctgtaccggcggcctgatctgc
cccgcgcaggcggtggagaagctgaagcatttcgtcagccgcgcggccttcgacatcgac
gggctgggcgccaagcagatcgagatgttcttcgcagacgatcagctgcccatccgcgag
cccgccgacatcttcaccctggccgatcgcgatgcccggaactttaccaagctgaagaac
cgcgaggggttcggcgaacgctcggccgaaaagctgttcgccgcgatcgaggatcgccgt
tcgatccccatggcccggctgatctttgccttgggcatccgccatgtgggcgaggtcgcg
gccgcgaccctggcccgccatttccacgactggcctgccttgatcgccgccatcgacggg
gcggcacgggagcccgcctttgccgccccggacgacaaggcccgtcgcgcggccttggct
gacagcccgaactgggccgagctgaccggcatcgacggcatcggcgcggtgctggtcgat
tcgctggtgacgacgttcgcgcagccgaccgaacgcgccagcatcgaccggctggcgacc
cttctggacatccggccggtggatatcgccaatgcggtgcagaccgagatttccggcaag
acgctggtcttcaccgggacgctggagcggatgacccgcgccgaggccaaggcgcgggcc
gaggcgatgggggccaaggtcgcggggtccgtcagcgccaagaccgacctgctgatcgcg
gggcccggggcggggtccaaggccaccaaggccgaggcccttggcgtcaccgtcatcgac
gaggacgaatggctgcgcatcgcgggggccggatga
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