Phalacrocorax aristotelis (European shag): 142067986
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Entry
142067986 CDS
T11493
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142067986 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
parx03041
]
142067986 (EFTUD2)
Spliceosome [BR:
parx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
142067986 (EFTUD2)
Complex C
U5 SnRNP specific factors
142067986 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
142067986
NCBI-ProteinID:
XP_074973162
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All DBs
Position
23:complement(2072984..2094767)
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AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDDDDDDMGDHDEDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGIVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactatatcgggccggagctggactcggac
gacgacgacgatgaattgggcagagagtccaaggatctggacgagctcgaggatgatgat
gatgatgacgatatgggggaccacgacgaggaccaccctgggatggaggtggtgctgcac
gaggataagaaatactaccccaccgccgaggaggtctacgggcccgaagtagagacgatc
gtacaagaggaagacacgcagcctcttactgagcctattattaaacctgtgaaaaccaaa
aaattctctctgatggaacagacgttaccggtcactgtctatgagatggatttcctggca
gatctgatggacaactcggagctaattcgaaatgtgactctgtgtgggcacctgcaccac
gggaagacatgttttgttgactgcctgatagaacagacacacccagaaatccggaagcgc
tatgaccaggacctttgctacactgatatattgttcacagagcaagagaggggagttggg
atcaagagcacaccagtgactattgttctgccagacaccaaaggaaagtctttcctcttc
aacatcatcgacactccaggtcacgtcaatttttctgacgaggtgacagctggccttcgt
atttcggacggcattgtactcttcattgatgcagctgagggggtgatgctgaacacagag
aggctgatcaagcacgcggtgcaggaaaggctcgcagtgaccgtgtgcatcaacaagata
gaccgactgatcctggagctgaaattgccccctacggatgcttattacaaactccgacat
atcgtagatgaagttaatggtctgatcagcatgtattccaccgatgagaacctcgttctg
tctccccttctgggaaacgtgtgtttctccagttcgcagtacagcatctgcttcacgctg
ggatcttttgcaaagatttatgcagacacatatggagatatcaattatcaggagtttgca
aagcggctctggggtgacatctacttcaacccaaagacccgcaagttcactaaaaaggcc
ccaacgagcagttctcagcgcagttttgtggagttcattctggagcccctgtacaagatc
ctggctcaggtggtgggggatgtggatacgaccctgcccaggactctggatgagcttggc
attcacctgaccaaagaggagttgaaactgaacattcggcccctcctgcggcttgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcatatcccctcc
ccaaaagttggagccaagacgaaaatcgagcatacctacactggcggtgtcgactctgac
ctaggggaggccatgagtgaatgcgacccggatggtccgttgatgtgtcacacgacaaaa
atgtacagcacagatgacggtgttcagttccacgcctttggcagagtgctcagtggtacc
atccatgctgggcagcctgtgaaggtccttggagagaactataccctggaagatgaggag
gattcccagatctgcactgtcgggcgcctctggatctcggttgcgaggtatcacattgag
gtaaaccgggttcctgctggcaactgggtgctgatagaaggagtagaccagcccatagtg
aagactgcaaccgtcacagagcctcggggaaatgaggaggctcagatcttccgtcctttg
aagttcaacaccacatctgtcatcaaaatcgctgtagagccggtcaacccctcagagctc
cccaaaatgttagatggtctccgcaaagtcaacaagagttacccctcgcttactaccaag
gtggaagagtctggggagcatgtgatcctggggacgggggagctctatctggattgtgtg
atgcatgatctacggaagatgtattcagagattgatatcaaggtcgccgatccagttgtg
acattctgcgagacagtggtggaaacgtcctccctaaagtgctttgctgagacacccaac
aagaagaacaagatcacgatgattgctgagcctctggagaagggactcgcagaggacatt
gaaaatgaagtggtccagataacgtggaatagaaagaagctaggtgaattcttccagact
aagtatgactgggatttgctggctgcccgttccatctgggcctttgggccagacgccact
ggcccaaacatcctcgtagatgatacgctgccctcagaggtggacaagtcgctgctgggc
tctgtgaaggacagcattgtgcaaggatttcagtgggggaccagggaagggcctctctgt
gatgaactgatccgcaacgtgaagtttaagatcctggatgcagtgattgctcaggagccc
ttgcaccggggtggaggacagatcatcccaacggcccggagagtggtgtattccgctttt
ctgatggccacccctcgcctgatggagccctactacttcgtggaggtgcaggctcctgcc
gactgcgtgtctgcagtgtacacggtcctggccaggcggagaggccatgtgacgcaagat
gctccaatcccaggctcccctctctacaccatcaaagccttcatcccagccattgattca
tttgggtttgagacagacttgaggacccacacgcagggacaagccttctcgctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcatcgttatccgacct
ctggagccccaaccagccccacatctggccagagagttcatgatcaagaccaggcgtagg
aagggcttgagcgaggatgtgagcatcagcaagttcttcgacgaccccatgttgctggag
ctggccaagcaagatgttgttctcaactaccccatgtga
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