Parasaccharibacter sp. TMW 2.1888: DTQ13_01100
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Entry
DTQ13_01100 CDS
T08091
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
parz
Parasaccharibacter sp. TMW 2.1888
Pathway
parz03030
DNA replication
parz03410
Base excision repair
parz03420
Nucleotide excision repair
parz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
parz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DTQ13_01100
03410 Base excision repair
DTQ13_01100
03420 Nucleotide excision repair
DTQ13_01100
03430 Mismatch repair
DTQ13_01100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parz03032
]
DTQ13_01100
03400 DNA repair and recombination proteins [BR:
parz03400
]
DTQ13_01100
Enzymes [BR:
parz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DTQ13_01100
DNA replication proteins [BR:
parz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DTQ13_01100
DNA repair and recombination proteins [BR:
parz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DTQ13_01100
NER (nucleotide excision repair)
GGR (global genome repair) factors
DTQ13_01100
MMR (mismatch excision repair)
DNA ligase
DTQ13_01100
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DTQ13_01100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
UPO79163
LinkDB
All DBs
Position
244433..246511
Genome browser
AA seq
692 aa
AA seq
DB search
MTGTPTPAQRHAELEEKIARWNEAYHGQDNPEVSDAEYDNARLELVMLEARHPELKRRDG
VSSQVGAAPNPAFGKVKHRAPMLSLDNVFSEEEFTQFVSRIGRFLGLDEAQTDGLKFVAE
PKIDGLSISLTYEKGQLTVATTRGDGTTGEDVTANVRTISSIPQTLPAPFPDLLEIRGEI
FMSRADFLALNRQQEERGEKPFANPRNAAAGSLRQLDASVTARRPLGLFAYGLGYNTGIT
VKTHSDWLDQLKTWGFTVNPLSRAINHASDVPAYVETLARERPDLDYDIDGIVFKIDAID
LQTRLGFVGRAPRWAIAWKFPAEQAITRLNEIEIQVGRTGALTPVAHLEPINVGGVIVSR
ATLHNEDEIRRLDVRPGDLVRIQRAGDVIPQVLGVVDADRQDRAAPFHFPDHCPVCHAHA
ERIGNEAVRRCSGGLTCPAQTVERLIHFVSRKAFDIDGLGERSIRSFHDLGLVQRPGDIF
RLHEHRDRLQKLEGWGAQSVDNLLQAIEDRRTISLPRFIYALGIRRIGERNAQLLARHYQ
SFPVWHTAMLAAIRPESEERTALSAIMGIGPAIAEEVAAFFDEEHNRAALDDLTPSLTIS
EETGPDADDEGPAPLAGQVMVFTGSLTTMSRAEAKAIAERLGAQVTDNVSRRTTLVVLGE
KAGSKAKKAHELNIRTLDEMGWRGMVGLAETD
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaccggaacccccacccccgcccagcgtcatgccgaactggaagaaaagatcgcccgc
tggaacgaggcctatcatggacaggacaaccccgaagtctccgatgccgagtatgacaat
gcccggctggagctggtcatgctggaggcccgccatccggaactgaagcgcagggatggt
gtctcctcacaggtcggagctgctcccaatccggcctttggcaaagtgaagcaccgtgcc
cccatgctctcgctggacaacgtcttcagcgaggaggagttcacccagttcgtcagccgg
atcggccggtttctcgggcttgacgaggcccagacggacgggctgaaatttgtggccgaa
cccaagattgacggcctttccatcagcctgacctacgaaaaaggccagctgacggttgcc
acgacccggggcgatggcacgacgggtgaggatgtcaccgccaacgtgcggaccatcagc
tccattccccagaccctgcccgctccttttcctgacctgctggaaatccggggcgaaatc
ttcatgagccgggccgacttcctggctctcaacagacagcaggaagagcggggcgaaaag
ccctttgccaatccacgcaatgccgcagccgggtcgctccgccagctggacgcctctgtc
acagcccgccgccctctggggctgttcgcctacgggctgggttacaataccggcataacc
gtcaagacccattcggactggctggaccagctgaaaacatggggattcactgtcaatcca
ctctcccgggccataaaccatgccagtgacgtgcctgcctatgtggagaccctggccagg
gaacggcctgaccttgattatgacattgatggcatcgtcttcaagattgacgccatagac
cttcagacacgccttggttttgtaggccgtgcccctcgttgggccattgcatggaagttc
ccggcggaacaggccatcacccgactgaatgagattgaaattcaggtggggcggactggt
gccctcacccccgtggcgcatctggaacccatcaatgtcggcggtgtcatcgtatcccgg
gccaccctgcataatgaagatgaaatccgccgtctggatgtccgccccggcgacctcgtg
cgcatccagcgggccggggatgtcatcccgcaggtactgggcgtcgtggatgcagaccgg
caggaccgggccgcccccttccattttcccgatcactgccccgtctgccacgcccatgcc
gaacgcatcggcaatgaagcggtccgccgctgctccgggggcctgacctgcccggcccag
acggtcgaaaggctcatccatttcgtctcccgcaaggcgtttgacattgacgggctggga
gagcgcagcatccgcagttttcatgacctcgggctggtccagcggccgggagacattttc
cgcctgcatgagcatcgggaccgcctccagaaactggaaggctggggggcacagtcggtc
gacaacctgcttcaggccattgaagaccgccggaccatcagcctcccccgcttcatctac
gcgctcggcatccggcgcattggcgagcgcaatgcccagcttctggcccgccactaccag
agctttcccgtctggcatacggcgatgctggcagccatcaggcccgaaagcgaagaacgg
accgccctgagtgccatcatgggcatcggccctgccattgctgaagaagttgccgccttc
tttgatgaggaacataaccgggctgcgctggatgatctcaccccctccctgaccatcagc
gaggagaccggtcctgatgctgatgacgagggtccagcgcctctggctggtcaggtcatg
gtgttcacggggtctctcaccaccatgtcccgagccgaagccaaggccattgccgaacgt
ctgggcgcacaggtgacagacaacgtctcccgtcgcacgacactggtcgtactgggagaa
aaagctggctccaaagccaaaaaagcccacgagctgaacattcgcacgcttgatgaaatg
gggtggcgcggcatggtcgggctggccgagacagactga
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