Pseudomonas asiatica: LG197_25050
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Entry
LG197_25050 CDS
T08841
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pasi
Pseudomonas asiatica
Pathway
pasi03030
DNA replication
pasi03410
Base excision repair
pasi03420
Nucleotide excision repair
pasi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LG197_25050 (ligA)
03410 Base excision repair
LG197_25050 (ligA)
03420 Nucleotide excision repair
LG197_25050 (ligA)
03430 Mismatch repair
LG197_25050 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pasi03032
]
LG197_25050 (ligA)
03400 DNA repair and recombination proteins [BR:
pasi03400
]
LG197_25050 (ligA)
Enzymes [BR:
pasi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LG197_25050 (ligA)
DNA replication proteins [BR:
pasi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LG197_25050 (ligA)
DNA repair and recombination proteins [BR:
pasi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LG197_25050 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LG197_25050 (ligA)
MMR (mismatch excision repair)
DNA ligase
LG197_25050 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LG197_25050 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
5_3_exonuc
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WDM87830
LinkDB
All DBs
Position
complement(5388949..5391279)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRIHELRAELDQHNYRYYVLDEPSVPDAEYDRLFNELKALEAEYPHLVTPDSPTQR
VGGAALAAFSQVRHEVPMLSLGNAFEEADLREFGRRVVDGLDQPGAVDYSCEPKLDGLAV
SLLYRDGLLVQGATRGDGTTGEDISANVRTVRNIPLRLQGEGWPAVLEVRGEVYMSKAGF
DRLNAAQAEAGGKTFANPRNAAAGSLRQLDPKITASRPLEFCCYGVGQVSASIGDSHIGI
LEQLKAWGLPISRELKHAAGIEECLAYYRDIGERRNSLPYEIDGVVFKVNSLAAQRELGF
RAREPRWAIAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPVQVPSECPVCGSQVERTQLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLEFDQIVGLEGFAEVSSKKLLDAIEASKRPGLARFIYALGIPDVGEETAKVLAR
SLGSLARVQQALPQVLTYLPDIGLEVAYEIHNFFEDEHNRKVIKQLLDSGMQLQDEGELA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIAADGIDLRQALAAKQAEAVR
EFFKDEANQKLARDIEAQLLAFGMHWSSEKKVAEGLPLAGQTWVLTGTLERMSRDIAKEK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVKVLDEDAFVTFLGEQGIAV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgaaacccgtatccacgaactgcgtgccgagctcgaccagcacaactaccgc
tactacgtgctcgatgagccaagcgtgcccgatgccgaatacgaccgcctgttcaacgag
ctcaaggcgcttgaagccgaatacccgcacctggtaacccctgactcgcccacccagcgt
gtcggtggcgcagccctggccgcgttcagccaggtccgccacgaagtgcccatgctcagc
ctgggcaacgctttcgaagaagccgacctgcgtgagttcggccgccgcgtggtagacggc
ctcgaccagcccggtgcggtcgactacagctgcgagcccaagctcgacggcctggccgtg
agcttgctgtaccgcgacggtctgctcgtacagggcgccacccgtggcgacggcaccacc
ggcgaagacatcagtgccaacgtacgcaccgtgcgcaacatcccgctcaggctgcaaggc
gagggatggcctgcggtgctggaggtgcgcggcgaggtgtacatgagcaaggccggtttc
gaccggctcaacgccgcccaggccgaagccggcggcaagacctttgccaacccgcgcaac
gccgcagccggcagcctgcgtcagctggacccgaaaatcaccgccagccgcccgttggag
ttctgctgctatggcgtcggccaggtgtctgcgagcattggcgacagccacatcggcatc
ctcgaacagctcaaggcgtgggggttgccgatcagccgcgaactcaagcatgccgccggt
attgaagaatgcctggcctactatcgcgacatcggcgagcgacgcaacagcctgccctac
gaaatcgacggcgtggtgttcaaggtcaacagcctggccgcccagcgcgaactgggcttc
cgtgcccgtgagccccgctgggcgattgcacacaagttcccggccatggaagagctgacc
gaggtgctggatgtcgagttccaggtcggccgcaccggcgcggtaacgcctgtggcacgc
cttaagccggtcaaggtggccggtgtgaccgtgtccaacgccaccctgcacaacatggac
gaaattgcccgcctgggcctgcgcattggcgacacggtgatcatccgccgcgccggtgac
gtgattccgcaggtgatgcaggtagtgctggagcgccgcccggaagatgcgcgcccggtg
caggtgccgagtgagtgcccggtatgcggctcgcaggtcgaacgtacccagttggtgaag
cgtagcaagggcaaggaaacaaccagcgagggggcggtgtaccgctgcgtcggtcgcctg
gcctgtggcgcccaactcaagcaggcgatcatccactacgtgtcacgccgcgccatggac
atcgatggcctgggcgagaagagcgtcgagcaactggtggacgaaggcctgatcggttcg
ccggccgacctgtacaagctggaattcgaccagatcgtcggcctggaaggctttgccgaa
gtgtccagcaagaagctgctggatgccatcgaagccagcaagcgcccgggcctggcgcgc
ttcatctacgccctgggtatcccggacgtaggcgaggagaccgccaaggtgctggcccgc
tcgctgggcagcctggcgcgcgtgcagcaagcgctgccgcaagtgctcacctacctgccg
gacatcggcctggaggtggcgtacgagatccacaacttcttcgaggacgagcacaaccgc
aaggtcatcaagcagttgctcgacagcggcatgcaactgcaggacgaaggcgagctggct
gccgagttcgccgccagcaccaccttggccggcatgatcgccaagctcgacatcgcctcg
gttggcccgaccggtgccgagaagctggtggccaagctagacagcctggacaagatcatc
gccgccgacggtatcgacctgcgccaggccctggcggccaagcaggccgaagccgtgcgc
gagttcttcaaggatgaagccaaccagaagctggcccgggacatcgaggcacagttgctg
gcgttcggcatgcactggagcagcgagaagaaagtggccgaaggcttgccgctggccggc
cagacctgggtgctgaccggcaccctggagcgcatgagccgcgacatcgccaaggaaaag
ctggaaagcctgggggccaaggtggcgggttcggtatccggcaagacccactgcgtggtg
gcggggccgggtgcggggtccaagctggccaaggccagtgagttgggtgtgaaggtgctt
gatgaagatgccttcgtcaccttcctgggcgaacagggcatcgctgtctga
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