Pseudomonas asturiensis: N015_09945
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Entry
N015_09945 CDS
T08470
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
past
Pseudomonas asturiensis
Pathway
past03030
DNA replication
past03410
Base excision repair
past03420
Nucleotide excision repair
past03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
past00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N015_09945 (ligA)
03410 Base excision repair
N015_09945 (ligA)
03420 Nucleotide excision repair
N015_09945 (ligA)
03430 Mismatch repair
N015_09945 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
past03032
]
N015_09945 (ligA)
03400 DNA repair and recombination proteins [BR:
past03400
]
N015_09945 (ligA)
Enzymes [BR:
past01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N015_09945 (ligA)
DNA replication proteins [BR:
past03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N015_09945 (ligA)
DNA repair and recombination proteins [BR:
past03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N015_09945 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N015_09945 (ligA)
MMR (mismatch excision repair)
DNA ligase
N015_09945 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N015_09945 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
DUF4796_N
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QHF02714
UniProt:
A0ABX6HBI9
LinkDB
All DBs
Position
2221600..2223948
Genome browser
AA seq
782 aa
AA seq
DB search
MKAVETRILELRAELDQHNYRYHVLDEPSIPDVEYDRLFHELKALEAENPHLVTPDSPTQ
RVGSAALSAFTQVRHEVPMLSLGNAFEEDDMHEFDRRVTEGLDLPEGSRKVQYSCEPKLD
GLAVSLLYRDGALVRGATRGDGAMGEDISVNVRTVRNIPLKLHGTGWPEVLEVRGEVFMS
KAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQVSAEVADT
HVDVLNQLKAWGMPVSHELKLADGIEACLAYYRDIGERRLSLSYEIDGVVFKVNRLADQR
ELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATL
HNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVMERRPEDARPVEVPKTCPVCGSHVERT
QLIKRSKGKATVSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGDKTIEQLVDEK
LIGSPADLYTLEYDQIIDLEGFAKISSEKLLKAIADSRQPTLSRFIYALGIPDVGEETAK
VLGRSLASLDRVKQALPEVLTYLPDIGLEVAHEIHSFFEDEHNRHVIDALLGECGLQLQD
QGELGAEFAASTTLESLIDKLHVPSVGPGAAQKLADKFGTLEAVIGADWLDMRQALPEKQ
ARAVRDFFDDTANAERARAIEAQLKDFGMHWRSEKKVVEGLPLAGQTWVLTGTLERMSRE
VAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLLRLSELGVA
VD
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccgtcgaaacccgaatcctggaactgcgcgcagagctggatcagcacaactat
cgctaccacgttctggatgagcccagcattcccgatgtcgaatacgaccgcctgttccac
gaactcaaggcgctggaagccgagaatccgcatctggtcacgcccgattcgcccactcag
cgggtcggcagcgcggccttgtcggcgtttacccaggtacgtcacgaagtgccgatgctc
agtttgggcaacgcgttcgaagaagacgacatgcatgagttcgaccgacgggtgaccgaa
ggcctggatctgccggaaggcagtcgcaaggttcagtacagttgcgagcccaagctcgac
ggtctggcggtcagcctgttgtaccgcgacggcgcgctggtgcgtggcgcgacgcggggt
gacggggcgatgggtgaagacatcagcgtcaacgtgcgcacggtgcgcaacattccgctc
aagctgcatggcaccggctggcctgaggtgctggaagtgcgcggtgaagtgttcatgtcc
aaggccggtttcgagcggcttaacgccagccagctggaagtgggcggcaagaccttcgcc
aacccgcgtaacgcggcggctggcagcctgcgccagctggattcgaagatcaccgccaac
cgtccgctggagttctgctgctacggcctgggccaggtttctgctgaggtggcggacacc
cacgtggacgtgctcaatcagctcaaggcctggggcatgccggtcagtcacgagctgaaa
ctggcggacggcatcgaagcgtgcctggcctattaccgtgacattggcgagcggcggttg
tcgctgagctacgagatcgatggcgtggtgttcaaggtcaatcgcctggccgatcagcgt
gaactgggtttccgggcccgcgagccgcgctgggcaattgcccataaattcccggccatg
gaagagctgaccgagttgctggatgtggagtttcaggtgggacgcaccggcgcggtgacg
ccggttgcgcgcttgaagccagtcaaggtggcgggcgtcacggtcgccaatgcgaccctg
cataacatggacgaagtggcacgcctgggcctgatgatcggcgacaccgtgatcattcgc
cgtgccggggatgtcatcccgcaggtcgtgcaagtggtcatggagcgccgtcccgaggac
gcccggccagtcgaggtgccgaaaacctgtccggtgtgtggctcgcatgtcgagcgcacg
cagctgatcaagcgcagcaagggcaaggcaaccgtcagcgaaggcgcggtgtaccgttgc
gtgggtcgcctggcctgtggcgcacagctcaagcaggcgatcatccattacgtgtcgcgt
cgcgccatggacatcgaaggcctgggcgacaagaccatcgagcaactggtggacgaaaag
ctgattggctcgcctgccgacctgtacacactcgaatacgatcagatcatcgacctggaa
ggttttgccaaaatctccagcgaaaagctgctcaaggcgattgccgacagtcgtcagcca
acgctgtcacgtttcatctacgcgctgggtattccggatgtcggtgaggagacggccaag
gtgctggggcgttcgctggcgtccctggatcgcgtcaagcaggccttgcctgaagtgctg
acgtacctgccggacatcggcctggaagtcgctcatgagattcacagcttcttcgaggat
gagcataaccgtcatgtgatcgacgcactgctgggcgagtgcggtctgcaattgcaggat
cagggtgagctgggtgccgagttcgcggccagtaccacgcttgaaagtctgatcgacaaa
ctgcacgtgccctcggtcggtccgggtgccgcacagaagctggccgacaagttcggcacg
ctggaggcggtgattggcgcagactggctggacatgcgtcaggcgttgccggagaagcag
gccagggcggtgcgtgatttcttcgatgacaccgccaacgccgagcgtgcgcgggctatc
gaagcgcaactcaaggacttcggcatgcactggcgcagcgagaaaaaggtcgtcgaaggc
ctgccgctggccgggcagacctgggtgctgaccggcaccctggagcgcatgagtcgcgag
gtcgccaaggaaaaacttgaaagcctgggtgccaaggtctcaggctccgtctcggccaag
acccatactgtggtcgcagggccgggtgcgggctccaagctgaccaaagccaatgagctg
ggcctgacggtgctggatgaggatgcgctgctgttgcgtctgagcgaactgggtgtggcg
gtggactga
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