Pseudomonas atacamensis: JWU58_18335
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Entry
JWU58_18335 CDS
T07336
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pata
Pseudomonas atacamensis
Pathway
pata03030
DNA replication
pata03410
Base excision repair
pata03420
Nucleotide excision repair
pata03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JWU58_18335 (ligA)
03410 Base excision repair
JWU58_18335 (ligA)
03420 Nucleotide excision repair
JWU58_18335 (ligA)
03430 Mismatch repair
JWU58_18335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pata03032
]
JWU58_18335 (ligA)
03400 DNA repair and recombination proteins [BR:
pata03400
]
JWU58_18335 (ligA)
Enzymes [BR:
pata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JWU58_18335 (ligA)
DNA replication proteins [BR:
pata03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JWU58_18335 (ligA)
DNA repair and recombination proteins [BR:
pata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JWU58_18335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JWU58_18335 (ligA)
MMR (mismatch excision repair)
DNA ligase
JWU58_18335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JWU58_18335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
QSL86120
LinkDB
All DBs
Position
complement(4033958..4036315)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAKTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAANPELITSDSPTQ
RVGSMALTAFTQVRHEIPMLSLGNAFEESDMREFDRRVNEGLDVPAGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGLLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGEGWPATLEVRG
EVFMSKAGFERLNASQLEIGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSH
DIADTHIGNLKQLQKWGMPISHELRLAKGIDECLEYYRDIGERRNSLAYEIDGVVFKVNS
IADQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVTERRPDDARPVAIPESCPVCGS
HVERTQLVKRSKGKETFSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGDKSVEQ
LVDEGLVSSPADLYALKFDDIVDLEGFAEVSSNKLLKAIEDSKQPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQQALPHVLTYLPDVGLEVAHEIHSFFEDAHNQQVISELLGHGL
QIQDQGELGAEFAASTTLGGLLDKLHIPFVGPGGAQKLADRFGSLEAVMNADWLDMRQAL
PEKQANSVREFFASPEHRQLAERAEQQLRDFGMHWQSEKKVVEGLPLSGETWVLTGKVEL
MSRDVAKDHLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGVKIMDEETFIAFLKT
HGISV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgccaaaacccgcattctagagctgcgcgctgagctggatcagcacaactat
cgctatcacgttctcgacgagccgagcattcccgatgccgagtacgaccgcttgttccac
gagctcaaggcgctggaagcggccaatccggaactgatcaccagcgactcgccgacccag
cgcgtcggcagcatggcgttgaccgcgttcactcaggtgcgtcacgaaattccgatgctc
agcctcggcaacgctttcgaagaatccgacatgcgcgagttcgatcgccgcgtcaacgaa
ggcctcgacgtgccggccggcgatctgtttggtggcggcgcggcggtggaatacagctgc
gagccgaagctcgatggcctggcggtcagcctgctgtatcaggatggtctgctggtgcgc
ggcgccacccggggcgatggcaccacgggcgaagacattagcgtcaacgtgcgcaccgtg
cgcaatattccgctgaagctgcacggcgaaggctggccggcgacgctggaagtgcgcggt
gaagtgttcatgtccaaggccggtttcgagcgcctcaatgcttcgcaactggaaatcggc
ggcaagaccttcgccaacccgcgcaacgcggcagcaggcagcctgcgccagctcgactcg
aagatcaccgccaatcgtccgctggaattctgctgctatggcatcggtcaggtgtcacac
gatatcgccgacacccacatcggcaacctcaagcagttgcagaagtggggcatgccgatc
agtcacgaactgaggctggccaagggtatcgacgagtgcttggagtattaccgcgacatc
ggcgagcgccgtaactcgctggcctatgaaatcgatggcgtggtgttcaaggtcaacagc
atcgccgaccagcgtgaactgggcttccgcgcccgcgagccgcgctgggcgatcgcgcac
aaattcccggcgatggaagaactcaccgagctgctcgacgtggaattccaggtcggccgc
accggtgcggtgactccggtggcgcgtctgaaaccggtgaaggtcgccggcgtcaccgtg
gccaacgccacgttgcacaacatggacgaagtcgcgcgtctgggcctgatgatcggcgac
acggtgatcatccgccgcgccggtgatgtgattccgcaagtggtgcaggtagtcaccgag
cgtcgccccgatgacgcgcgcccggtggccattcctgaaagctgcccggtgtgcggctcg
cacgttgaacgcacgcaactggtcaagcgcagcaagggcaaggaaaccttcagcgaaggt
gcggtgtatcgctgcgtcggccgactggcctgtggtgcgcaactgaaacaggcgatcatt
cacttcgtctcgcgccgggccatggacatcgaaggcttgggcgacaagagcgtcgagcaa
ctggtcgacgaaggcctggtcagctcgccggccgatctgtatgcgctgaagttcgacgac
atcgtcgatctggaaggctttgccgaggtatcgagcaacaagcttctcaaagccattgaa
gacagcaagcaaccgagcctggcacgttttatctatgccctcggcattcccgatgtcggc
gaagagacggcgaaggtgctggcgcgttcgctgggttcgctggagcgcgtgcaacaggcc
ttgccgcatgtgctgacctacctcccggatgtcggcctggaagtggcgcacgagatccac
agtttctttgaggatgcgcacaaccagcaggtcatcagcgaattgctcggccatggtttg
cagattcaggatcaaggcgagttgggcgccgaattcgccgccagtaccaccctgggcggc
ttgctcgacaaactgcacattcccttcgtcggccccggtggtgcgcagaaactcgccgat
cgcttcggttcgctggaagcggtgatgaacgctgactggctggacatgcgccaggcattg
ccggagaagcaggccaactcggtgcgcgagttcttcgcctcgcctgagcatcggcaactg
gccgagcgggccgagcagcagttgcgcgatttcggcatgcattggcagagcgagaaaaaa
gtcgtcgaaggtctgccgctgtccggcgaaacctgggtgctgaccggcaaggtcgaactg
atgagccgggatgtggccaaggatcatctggaaagccttggtgccaaggtcgccggttcg
gtgtcggcgaaaacccattgcgtggtcgcaggcccgggtgccgggtcgaaactgaccaag
gccaatgagctgggcgtgaagatcatggatgaagagacgtttatcgctttcctcaaaacc
cacggtatttccgtatga
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