Photobacterium atrarenae: NNL38_12015
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Entry
NNL38_12015 CDS
T10583
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pate Photobacterium atrarenae
Pathway
pate03030
DNA replication
pate03410
Base excision repair
pate03420
Nucleotide excision repair
pate03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pate00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NNL38_12015 (ligA)
03410 Base excision repair
NNL38_12015 (ligA)
03420 Nucleotide excision repair
NNL38_12015 (ligA)
03430 Mismatch repair
NNL38_12015 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pate03032
]
NNL38_12015 (ligA)
03400 DNA repair and recombination proteins [BR:
pate03400
]
NNL38_12015 (ligA)
Enzymes [BR:
pate01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NNL38_12015 (ligA)
DNA replication proteins [BR:
pate03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NNL38_12015 (ligA)
DNA repair and recombination proteins [BR:
pate03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NNL38_12015 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NNL38_12015 (ligA)
MMR (mismatch excision repair)
DNA ligase
NNL38_12015 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NNL38_12015 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DUF4796_N
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
UTV27060
LinkDB
All DBs
Position
1:complement(2562087..2564102)
Genome browser
AA seq
671 aa
AA seq
DB search
MSHDIQQQLSALREQLAYHGHRYYVEDSPEIPDAEYDRMMQQLLALEAAHPELITADSPS
QRVGGKPLDGFSEVRHELPMLSLDNAFSDEELKAFEKRIGDRLPASFALTFCCEPKLDGL
AVSLMYENGVLVQAATRGDGTTGENITANVRTIRAVPLKLHGEGWPARLEVRGEVFMPKQ
GFDALNASAQKKGEKTFVNPRNAAAGSLRQLDPKITATRPLSFYAYSVGVVEGGTLADSQ
FERLVQLKGWGIPMCPESRRLSNIEQVIGYYQDIGERRGILPYEIDGVVIKVDDIETQQR
LGFVARAPRWAIAYKFPAQEEMTRLNNVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEVARLGVMIGDTVIVRRAGDVIPQIVSVVASQRPEDAAEIRFPSTCPVCQSKVERVE
GEAVTRCSGGLYCRAQRKEALKHFVSRKALDVDGCGEKVIEQLVEREMVTTPADLFKLSA
GVLTVLERMGPKSAQNLVAALEKSKLTTLPRFLYSLGIREVGEATAANLAKHFETIEALS
QATQEQLIEVPDVGNIVAEHIVNFFREAHNLEVIQALRDVGVNWPAIEKPADDVELPLDG
KTVVLTGSLSLLTRSEAKAALQEMGAKVTGSVSKKTDLLVAGEAAGSKLTKAQELGIEIW
DEQALVDFMQR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagtcacgatattcagcagcaattgtcggcgctgcgcgaacaacttgcttatcatggt
caccgttattacgttgaagacagtccggaaattcccgatgctgaatatgaccgcatgatg
cagcaattgcttgccctggaagcggcgcatccggagctgatcacggctgattcgccaagc
cagcgggtgggtggtaagccgttggacggctttagcgaagtgcgtcacgagctgccgatg
ttgtctttggataatgcgtttagtgatgaagaactcaaagcgtttgaaaaacgcatcggt
gatcgattgcctgccagctttgcgctgacattttgttgtgagccgaagctcgatggcctg
gcggtcagcctgatgtacgaaaatggggtactggtgcaggctgctacacggggagacggg
accacaggtgagaatattaccgccaacgtccggaccattcgcgctgtgcccctgaagctg
catggcgaaggctggccggcgcggctggaggtcaggggcgaagtctttatgcccaagcaa
ggttttgacgccttaaatgccagcgcgcagaaaaaaggtgagaaaacgtttgtcaatccg
cgcaatgctgcggcaggcagcttgcgccagttggacccgaaaattacggcgacccgtccg
ctgagcttttacgcctactccgtcggtgtggtggaaggtggaacgctggcggacagtcag
tttgagcgtctggtccagctcaagggctggggaattccgatgtgcccggaaagccgccgg
ctgagtaatattgagcaagtcattggctattatcaggatattggtgagcggcgcggaatc
ctgccctatgagattgacggggtggtgatcaaggtcgatgatattgaaactcagcaacgg
ttagggtttgttgcccgcgcgccgcgttgggccattgcctataagtttccggctcaggag
gaaatgacccggctgaacaatgtcgaatttcaggtcggccgtaccggtgcaattactccg
gtggccaagctcgagccggtgtttgtcgggggcgtgactgtcagtaatgccacgctgcac
aatgccgatgaagtggcacggctcggggtgatgatcggcgatacggtgattgtgcgccgc
gccggggatgtgatcccgcaaattgtttccgtcgtcgcgtctcaacgtcccgaggacgcg
gctgagatccgcttcccgtcgacatgtccggtgtgtcagtctaaggtcgagcgtgtcgaa
ggggaggcggtgacgcgctgctccggtggattgtactgccgtgctcagcgtaaggaagca
ctgaagcatttcgtctcccgcaaagccctggatgtggatggctgtggtgaaaaagtcatt
gaacagctggtggagcgggaaatggtgaccactccggccgacttgttcaaactctccgcc
ggggtgctgacggtcctcgagcgtatggggccgaaatcagcgcagaacctggtggcagcg
ctggaaaagtccaagctgaccacattaccgcgtttcttgtactcgctcggaattcgtgaa
gtcggcgaggccacagcagcgaacctggccaaacatttcgaaaccatcgaagcgctgagt
caggctacgcaggagcagctgattgaagtgccggatgtcggaaatattgtggcggagcat
attgtgaatttcttccgcgaagcccataacctggaagtgattcaggcgctccgcgatgtc
ggcgtgaactggccggcgatcgagaagccggcagacgatgtcgagcttccactggatggt
aaaacggtggtgctgacaggctctttgtccctactgacccgctcggaagccaaagcagca
ttgcaggagatgggagctaaagtaacgggcagcgtctcgaagaaaacggatctgctggtt
gccggtgaagcggccggatcgaaactgacgaaagcgcaggagctggggatcgaaatctgg
gatgagcaggcgctggttgattttatgcagcgttaa
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