KEGG   PATHWAY: abaj03030
Entry
abaj03030                   Pathway                                
Name
DNA replication - Acinetobacter baumannii BJAB0868
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
abaj03030  DNA replication
abaj03030

Organism
Acinetobacter baumannii BJAB0868 [GN:abaj]
Gene
BJAB0868_01222  DNA polymerase III, epsilon subunit-related 3'-5' exonuclease [KO:K14159] [EC:3.1.26.4 2.7.7.7]
BJAB0868_01619  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
BJAB0868_02288  DNA polymerase III, gamma/tau subunits [KO:K02343] [EC:2.7.7.7]
BJAB0868_01728  ATPase involved in DNA replication [KO:K02341] [EC:2.7.7.7]
BJAB0868_00596  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
BJAB0868_00298  DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
BJAB0868_00015  DNA polymerase sliding clamp subunit (PCNA-like protein) [KO:K02338] [EC:2.7.7.7]
BJAB0868_01163  Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
BJAB0868_02416  Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
BJAB0868_03041  Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
BJAB0868_00851  DNA primase (bacterial type) [KO:K02316] [EC:2.7.7.101]
BJAB0868_03530  Single-stranded DNA-binding protein [KO:K03111]
BJAB0868_00669  DNA polymerase I - 3'-5' exonuclease and polymerase domains [KO:K02335] [EC:2.7.7.7]
BJAB0868_00817  NAD-dependent DNA ligase (contains BRCT domain type II) [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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