KEGG   PATHWAY: aful03050
Entry
aful03050                   Pathway                                
Name
Proteasome - Aythya fuligula (tufted duck)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
aful03050  Proteasome
aful03050

Other DBs
GO: 0000502
Organism
Aythya fuligula (tufted duck) [GN:aful]
Gene
116498558  PSMD3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
116496048  PSMD9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
116496527  PSMD12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
116498442  PSMD11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
116493167  PSMD6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
116494119  PSMD7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
116490125  PSMD13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
116490585  PSMD14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
116499625  PSMD4; 26S proteasome non-ATPase regulatory subunit 4 [KO:K03029]
116492395  PSMD2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
116492388  PSMD1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
116495772  ADRM1; proteasomal ubiquitin receptor ADRM1 isoform X1 [KO:K06691]
116500991  PSMC2; 26S proteasome regulatory subunit 7 [KO:K03061]
116490012  PSMC1; 26S proteasome regulatory subunit 4 isoform X1 [KO:K03062]
116498458  PSMC5; 26S proteasome regulatory subunit 8 [KO:K03066]
116489755  PSMC6; 26S proteasome regulatory subunit 10B [KO:K03064]
116489668  PSMC3; 26S proteasome regulatory subunit 6A [KO:K03065]
116501626  PSME1; proteasome activator complex subunit 1 isoform X1 [KO:K06696]
116498391  PSME3; proteasome activator complex subunit 3 isoform X1 [KO:K06698]
116487337  PSME4; LOW QUALITY PROTEIN: proteasome activator complex subunit 4 [KO:K06699]
116490024  PSMA6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
116486292  PSMA2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
116493320  PSMA4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
116495650  PSMA7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
116498920  PSMA5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
116490074  PSMA1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
116489597  PSMA3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
116496827  PSMB7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
116498431  PSMB3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
116498141  PSMB2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
116501634  PSMB5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
116488206  PSMB1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
116499784  PSMB4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
116498468  IFNG; LOW QUALITY PROTEIN: interferon gamma [KO:K04687]
116495896  PSMF1; proteasome inhibitor PI31 subunit [KO:K06700]
116501335  POMP; proteasome maturation protein [KO:K11599]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
aful04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   
LinkDB

DBGET integrated database retrieval system