KEGG   PATHWAY: amj01100
Entry
amj01100                    Pathway                                
Name
Metabolic pathways - Alligator mississippiensis (American alligator)
Class
Pathway map
amj01100  Metabolic pathways
amj01100

Module
amj_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:amj01100]
amj_M00002  Glycolysis, core module involving three-carbon compounds [PATH:amj01100]
amj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:amj01100]
amj_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:amj01100]
amj_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:amj01100]
amj_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:amj01100]
amj_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:amj01100]
amj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:amj01100]
amj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amj01100]
amj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:amj01100]
amj_M00014  Glucuronate pathway (uronate pathway) [PATH:amj01100]
amj_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:amj01100]
amj_M00027  GABA (gamma-Aminobutyrate) shunt [PATH:amj01100]
amj_M00029  Urea cycle [PATH:amj01100]
amj_M00032  Lysine degradation, lysine => saccharopine => acetoacetyl-CoA [PATH:amj01100]
amj_M00034  Methionine salvage pathway [PATH:amj01100]
amj_M00035  Methionine degradation [PATH:amj01100]
amj_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:amj01100]
amj_M00037  Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH:amj01100]
amj_M00038  Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH:amj01100]
amj_M00042  Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH:amj01100]
amj_M00043  Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH:amj01100]
amj_M00044  Tyrosine degradation, tyrosine => homogentisate [PATH:amj01100]
amj_M00046  Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:amj01100]
amj_M00047  Creatine pathway [PATH:amj01100]
amj_M00048  De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:amj01100]
amj_M00049  Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:amj01100]
amj_M00050  Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:amj01100]
amj_M00051  De novo pyrimidine biosynthesis, glutamine (+ PRPP) => UMP [PATH:amj01100]
amj_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:amj01100]
amj_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:amj01100]
amj_M00055  N-glycan precursor biosynthesis [PATH:amj01100]
amj_M00057  Glycosaminoglycan biosynthesis, linkage tetrasaccharide [PATH:amj01100]
amj_M00058  Glycosaminoglycan biosynthesis, chondroitin sulfate backbone [PATH:amj01100]
amj_M00059  Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH:amj01100]
amj_M00065  GPI-anchor biosynthesis, core oligosaccharide [PATH:amj01100]
amj_M00066  Lactosylceramide biosynthesis [PATH:amj01100]
amj_M00067  Sulfoglycolipids biosynthesis, ceramide/1-alkyl-2-acylglycerol => sulfatide/seminolipid [PATH:amj01100]
amj_M00068  Glycosphingolipid biosynthesis, globo-series, LacCer => Gb4Cer [PATH:amj01100]
amj_M00069  Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH:amj01100]
amj_M00070  Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH:amj01100]
amj_M00071  Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH:amj01100]
amj_M00073  N-glycan precursor trimming [PATH:amj01100]
amj_M00076  Dermatan sulfate degradation [PATH:amj01100]
amj_M00077  Chondroitin sulfate degradation [PATH:amj01100]
amj_M00078  Heparan sulfate degradation [PATH:amj01100]
amj_M00079  Keratan sulfate degradation [PATH:amj01100]
amj_M00082  Fatty acid biosynthesis, initiation [PATH:amj01100]
amj_M00083  Fatty acid biosynthesis, elongation [PATH:amj01100]
amj_M00085  Fatty acid elongation in mitochondria [PATH:amj01100]
amj_M00086  beta-Oxidation, acyl-CoA synthesis [PATH:amj01100]
amj_M00087  beta-Oxidation [PATH:amj01100]
amj_M00089  Triacylglycerol biosynthesis [PATH:amj01100]
amj_M00090  Phosphatidylcholine (PC) biosynthesis, choline => PC [PATH:amj01100]
amj_M00091  Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH:amj01100]
amj_M00092  Phosphatidylethanolamine (PE) biosynthesis, ethanolamine => PE [PATH:amj01100]
amj_M00094  Ceramide biosynthesis [PATH:amj01100]
amj_M00095  C5 isoprenoid biosynthesis, mevalonate pathway [PATH:amj01100]
amj_M00098  Acylglycerol degradation [PATH:amj01100]
amj_M00099  Sphingosine biosynthesis [PATH:amj01100]
amj_M00100  Sphingosine degradation [PATH:amj01100]
amj_M00101  Cholesterol biosynthesis, FPP => cholesterol [PATH:amj01100]
amj_M00103  Cholecalciferol biosynthesis [PATH:amj01100]
amj_M00107  Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH:amj01100]
amj_M00109  C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH:amj01100]
amj_M00110  C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH:amj01100]
amj_M00118  Glutathione biosynthesis, glutamate => glutathione [PATH:amj01100]
amj_M00120  Coenzyme A biosynthesis, pantothenate => CoA [PATH:amj01100]
amj_M00128  Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH:amj01100]
amj_M00129  Ascorbate biosynthesis, animals, glucose-1P => ascorbate [PATH:amj01100]
amj_M00130  Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH:amj01100]
amj_M00131  Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH:amj01100]
amj_M00132  Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH:amj01100]
amj_M00134  Polyamine biosynthesis, arginine => ornithine => putrescine [PATH:amj01100]
amj_M00135  GABA biosynthesis, eukaryotes, putrescine => GABA [PATH:amj01100]
amj_M00141  C1-unit interconversion, eukaryotes [PATH:amj01100]
amj_M00142  NADH:ubiquinone oxidoreductase, mitochondria [PATH:amj01100]
amj_M00143  NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria [PATH:amj01100]
amj_M00146  NADH dehydrogenase (ubiquinone) 1 alpha subcomplex [PATH:amj01100]
amj_M00148  Succinate dehydrogenase (ubiquinone) [PATH:amj01100]
amj_M00151  Cytochrome bc1 complex respiratory unit [PATH:amj01100]
amj_M00152  Cytochrome bc1 complex [PATH:amj01100]
amj_M00154  Cytochrome c oxidase [PATH:amj01100]
amj_M00160  V-type ATPase, eukaryotes [PATH:amj01100]
amj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amj01100]
amj_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:amj01100]
amj_M00367  C10-C20 isoprenoid biosynthesis, non-plant eukaryotes [PATH:amj01100]
amj_M00415  Fatty acid elongation in endoplasmic reticulum [PATH:amj01100]
amj_M00549  Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:amj01100]
amj_M00554  Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH:amj01100]
amj_M00555  Betaine biosynthesis, choline => betaine [PATH:amj01100]
amj_M00621  Glycine cleavage system [PATH:amj01100]
amj_M00632  Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:amj01100]
amj_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:amj01100]
amj_M00842  Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH:amj01100]
amj_M00844  Arginine biosynthesis, ornithine => arginine [PATH:amj01100]
amj_M00854  Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:amj01100]
amj_M00855  Glycogen degradation, glycogen => glucose-6P [PATH:amj01100]
amj_M00861  beta-Oxidation, peroxisome, VLCFA [PATH:amj01100]
amj_M00862  beta-Oxidation, peroxisome, tri/dihydroxycholestanoyl-CoA => choloyl/chenodeoxycholoyl-CoA [PATH:amj01100]
amj_M00868  Heme biosynthesis, animals and fungi, glycine => heme [PATH:amj01100]
amj_M00872  O-glycan biosynthesis, mannose type (core M3) [PATH:amj01100]
amj_M00880  Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:amj01100]
amj_M00882  Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH:amj01100]
amj_M00883  Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH:amj01100]
amj_M00892  UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH:amj01100]
amj_M00912  NAD biosynthesis, tryptophan => quinolinate => NAD [PATH:amj01100]
amj_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:amj01100]
amj_M00958  Adenine ribonucleotide degradation, AMP => Urate [PATH:amj01100]
amj_M00959  Guanine ribonucleotide degradation, GMP => Urate [PATH:amj01100]
amj_M00970  Proline degradation, proline => glutamate [PATH:amj01100]
amj_M00972  Proline metabolism [PATH:amj01100]
amj_M00974  Betaine metabolism, animals, betaine => glycine [PATH:amj01100]
amj_M00976  C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH:amj01100]
amj_M00977  C19-Steroid hormone biosynthesis (androgen backdoor pathway), pregnenolone => androsterone => dihydrotestosterone [PATH:amj01100]
Organism
Alligator mississippiensis (American alligator) [GN:amj]
Related
pathway
amj00010  Glycolysis / Gluconeogenesis
amj00020  Citrate cycle (TCA cycle)
amj00030  Pentose phosphate pathway
amj00040  Pentose and glucuronate interconversions
amj00051  Fructose and mannose metabolism
amj00052  Galactose metabolism
amj00053  Ascorbate and aldarate metabolism
amj00061  Fatty acid biosynthesis
amj00062  Fatty acid elongation
amj00071  Fatty acid degradation
amj00100  Steroid biosynthesis
amj00120  Primary bile acid biosynthesis
amj00130  Ubiquinone and other terpenoid-quinone biosynthesis
amj00140  Steroid hormone biosynthesis
amj00190  Oxidative phosphorylation
amj00220  Arginine biosynthesis
amj00230  Purine metabolism
amj00232  Caffeine metabolism
amj00240  Pyrimidine metabolism
amj00250  Alanine, aspartate and glutamate metabolism
amj00260  Glycine, serine and threonine metabolism
amj00270  Cysteine and methionine metabolism
amj00280  Valine, leucine and isoleucine degradation
amj00290  Valine, leucine and isoleucine biosynthesis
amj00310  Lysine degradation
amj00330  Arginine and proline metabolism
amj00340  Histidine metabolism
amj00350  Tyrosine metabolism
amj00360  Phenylalanine metabolism
amj00380  Tryptophan metabolism
amj00400  Phenylalanine, tyrosine and tryptophan biosynthesis
amj00410  beta-Alanine metabolism
amj00430  Taurine and hypotaurine metabolism
amj00440  Phosphonate and phosphinate metabolism
amj00450  Selenocompound metabolism
amj00470  D-Amino acid metabolism
amj00480  Glutathione metabolism
amj00500  Starch and sucrose metabolism
amj00510  N-Glycan biosynthesis
amj00511  Other glycan degradation
amj00512  Mucin type O-glycan biosynthesis
amj00513  Various types of N-glycan biosynthesis
amj00514  Other types of O-glycan biosynthesis
amj00515  Mannose type O-glycan biosynthesis
amj00520  Amino sugar and nucleotide sugar metabolism
amj00524  Neomycin, kanamycin and gentamicin biosynthesis
amj00531  Glycosaminoglycan degradation
amj00532  Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
amj00533  Glycosaminoglycan biosynthesis - keratan sulfate
amj00534  Glycosaminoglycan biosynthesis - heparan sulfate / heparin
amj00561  Glycerolipid metabolism
amj00562  Inositol phosphate metabolism
amj00563  Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
amj00564  Glycerophospholipid metabolism
amj00565  Ether lipid metabolism
amj00590  Arachidonic acid metabolism
amj00591  Linoleic acid metabolism
amj00592  alpha-Linolenic acid metabolism
amj00600  Sphingolipid metabolism
amj00601  Glycosphingolipid biosynthesis - lacto and neolacto series
amj00603  Glycosphingolipid biosynthesis - globo and isoglobo series
amj00604  Glycosphingolipid biosynthesis - ganglio series
amj00620  Pyruvate metabolism
amj00630  Glyoxylate and dicarboxylate metabolism
amj00640  Propanoate metabolism
amj00650  Butanoate metabolism
amj00670  One carbon pool by folate
amj00730  Thiamine metabolism
amj00740  Riboflavin metabolism
amj00750  Vitamin B6 metabolism
amj00760  Nicotinate and nicotinamide metabolism
amj00770  Pantothenate and CoA biosynthesis
amj00780  Biotin metabolism
amj00785  Lipoic acid metabolism
amj00790  Folate biosynthesis
amj00830  Retinol metabolism
amj00860  Porphyrin metabolism
amj00900  Terpenoid backbone biosynthesis
amj00910  Nitrogen metabolism
amj00920  Sulfur metabolism
amj00980  Metabolism of xenobiotics by cytochrome P450
amj00982  Drug metabolism - cytochrome P450
amj00983  Drug metabolism - other enzymes
amj01040  Biosynthesis of unsaturated fatty acids
KO pathway
ko01100   
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