KEGG   PATHWAY: aof00195
Entry
aof00195                    Pathway                                
Name
Photosynthesis - Asparagus officinalis (garden asparagus)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
aof00195  Photosynthesis
aof00195

Module
aof_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:aof00195]
aof_M00161  Photosystem II [PATH:aof00195]
Organism
Asparagus officinalis (garden asparagus) [GN:aof]
Gene
CCL56_pgp001  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
CCL56_pgp044  psbB; photosystem II CP47 chlorophyll apoprotein [KO:K02704]
109846754  uncharacterized protein LOC109846754 [KO:K02704]
CCL56_pgp075  psbC; photosystem II 44 kDa protein [KO:K02705]
CCL56_pgp076  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
CCL56_pgp054  psbE; photosystem II cytochrome b559 alpha subunit [KO:K02707]
CCL56_pgp055  psbF; photosystem II cytochrome b559 beta subunit [KO:K02708]
CCL56_pgp041  psbH; photosystem II phosphoprotein [KO:K02709]
CCL56_pgp087  psbI; photosystem II protein I [KO:K02710]
CCL56_pgp057  psbJ; photosystem II protein J [KO:K02711]
CCL56_pgp088  psbK; photosystem II protein K [KO:K02712]
CCL56_pgp056  psbL; photosystem II protein L [KO:K02713]
CCL56_pgp077  psbM; photosystem II protein M [KO:K02714]
109844687  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
109833064  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
109850041  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
109848533  psbP-like protein 1, chloroplastic isoform X1 [KO:K02717]
109839736  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
109832136  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
109832546  photosynthetic NDH subunit of lumenal location 2, chloroplastic [KO:K08901]
109833312  LOW QUALITY PROTEIN: oxygen-evolving enhancer protein 3-1, chloroplastic-like [KO:K08901]
109822247  LOW QUALITY PROTEIN: photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
109825832  photosystem II 22 kDa protein, chloroplastic [KO:K03542]
CCL56_pgp043  psbT; photosystem II protein T [KO:K02718]
109851543  photosystem II reaction center W protein, chloroplastic isoform X1 [KO:K02721]
109836713  photosystem II core complex proteins psbY, chloroplastic [KO:K02723]
CCL56_pgp074  psbZ; photosystem II protein Z [KO:K02724]
109834222  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
109826225  photosystem II reaction center PSB28 protein, chloroplastic [KO:K08903]
CCL56_pgp071  psaA; photosystem I P700 apoprotein A1 [KO:K02689] [EC:1.97.1.12]
CCL56_pgp072  psaB; photosystem I P700 apoprotein A2 [KO:K02690] [EC:1.97.1.12]
CCL56_pgp017  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
109833764  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
109836454  LOW QUALITY PROTEIN: photosystem I reaction center subunit IV, chloroplastic-like [KO:K02693]
109848617  LOW QUALITY PROTEIN: photosystem I reaction center subunit V, chloroplastic [KO:K08905]
109848327  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
109839904  photosystem I reaction center subunit VI-1, chloroplastic [KO:K02695]
CCL56_pgp061  psaI; photosystem I subunit VIII [KO:K02696]
CCL56_pgp051  psaJ; photosystem I subunit IX [KO:K02697]
109850215  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
109824261  LOW QUALITY PROTEIN: photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
109846896  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
109830285  photosystem I reaction center subunit N, chloroplastic [KO:K02701]
109830394  photosystem I subunit O [KO:K14332]
CCL56_pgp058  petA; component of cytochrome b6/f complex [KO:K02634]
CCL56_pgp040  petB; cytochrome f [KO:K02635]
109833255  cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic [KO:K02636] [EC:7.1.1.6]
CCL56_pgp039  petD; cytochrome b6/f complex subunit IV [KO:K02637]
CCL56_pgp052  petG; cytochrome b6/f complex subunit V [KO:K02640]
CCL56_pgp078  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
109828091  plastocyanin-like [KO:K02638]
109824250  ferredoxin, root R-B2-like [KO:K02639]
109825981  ferredoxin, root R-B2-like [KO:K02639]
109826078  LOW QUALITY PROTEIN: ferredoxin-like [KO:K02639]
109850071  uncharacterized protein LOC109850071 [KO:K02639]
109836764  ferredoxin, root R-B2-like [KO:K02639]
109825882  ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
109848079  ferredoxin--NADP reductase, root isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
109836866  ferredoxin--NADP reductase, leaf isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
109832152  cytochrome c6, chloroplastic [KO:K08906]
CCL56_pgp065  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
CCL56_pgp064  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
109833506  LOW QUALITY PROTEIN: ATP synthase gamma chain 1, chloroplastic-like [KO:K02115]
109834275  uncharacterized protein LOC109834275 [KO:K02115]
109850634  ATP synthase gamma chain 1, chloroplastic isoform X1 [KO:K02115]
CCL56_pgp086  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
109850591  ATP synthase delta chain, chloroplastic [KO:K02113]
109828428  uncharacterized protein LOC109828428 [KO:K02109]
CCL56_pgp085  atpF; ATP synthase CF0 B subunit [KO:K02109]
CCL56_pgp084  atpH; ATP synthase CF0 subunit III [KO:K02110]
CCL56_pgp083  atpI; ATP synthase CF0 subunit IV [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
aof00196  Photosynthesis - antenna proteins
aof00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
LinkDB

DBGET integrated database retrieval system