KEGG   PATHWAY: axy00920
Entry
axy00920                    Pathway                                
Name
Sulfur metabolism - Achromobacter xylosoxidans A8
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
axy00920  Sulfur metabolism
axy00920

Module
axy_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:axy00920]
Other DBs
GO: 0006790
Organism
Achromobacter xylosoxidans A8 [GN:axy]
Gene
AXYL_01741  sbp; sulfate-binding protein [KO:K23163]
AXYL_01742  cysT; sulfate ABC transporter, permease protein CysT [KO:K02046]
AXYL_01743  cysW; sulfate ABC transporter, permease protein CysW [KO:K02047]
AXYL_01744  cysA; sulfate/thiosulfate import ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
AXYL_02894  tauA; taurine ABC transporter, periplasmic binding protein [KO:K15551]
AXYL_02892  taurine transport system permease protein TauC [KO:K15552]
AXYL_02893  tauB; taurine import ATP-binding protein TauB [KO:K10831] [EC:7.6.2.7]
AXYL_03909  ABC sulfate ester transporter, periplasmic ligand binding protein [KO:K15553]
AXYL_04998  NMT1/THI5 like domain protein [KO:K15553]
AXYL_00064  NMT1/THI5 like family protein 1 [KO:K15553]
AXYL_02316  Tat pathway signal sequence domain protein 11 [KO:K15553]
AXYL_06525  ABC-type transporter, periplasmic component 5 [KO:K15553]
AXYL_03910  binding-protein-dependent transport system inner membrane component family protein 47 [KO:K15554]
AXYL_03911  binding-protein-dependent transport system inner membrane component family protein 48 [KO:K15554]
AXYL_02317  binding-protein-dependent transport system inner membrane component family protein 29 [KO:K15554]
AXYL_00308  binding-protein-dependent transport system inner membrane component family protein 5 [KO:K15554]
AXYL_06527  binding-protein-dependent transport system inner membrane component family protein 69 [KO:K15554]
AXYL_04996  binding-protein-dependent transport system inner membrane component family protein 56 [KO:K15554]
AXYL_00062  binding-protein-dependent transport system inner membrane component family protein 1 [KO:K15554]
AXYL_00309  ssuB1; aliphatic sulfonate import ATP-binding protein SsuB 1 [KO:K15555] [EC:7.6.2.14]
AXYL_03912  ssuB2; aliphatic sulfonate import ATP-binding protein SsuB 2 [KO:K15555] [EC:7.6.2.14]
AXYL_06526  ABC transporter family protein 107 [KO:K15555] [EC:7.6.2.14]
AXYL_00063  nitrate transport ATP-binding protein NrtC domain protein 1 [KO:K15555] [EC:7.6.2.14]
AXYL_02318  ABC transporter family protein 32 [KO:K15555] [EC:7.6.2.14]
AXYL_04997  ABC transporter family protein 77 [KO:K15555] [EC:7.6.2.14]
AXYL_00307  ssuE; FMN reductase [KO:K00299] [EC:1.5.1.38]
AXYL_01747  cysN; sulfate adenylyltransferase, large subunit [KO:K00956] [EC:2.7.7.4]
AXYL_01746  cysD; sulfate adenylyltransferase, small subunit [KO:K00957] [EC:2.7.7.4]
AXYL_01745  cysH; 5' adenylylsulfate APS reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
AXYL_03139  oxidoreductase molybdopterin binding domain protein 2 [KO:K00387] [EC:1.8.3.1]
AXYL_00293  sorA; sulfite:cytochrome c oxidoreductase subunit A [KO:K05301] [EC:1.8.2.1]
AXYL_05426  sulfur oxidation protein 2 [KO:K17222] [EC:2.8.5.2]
AXYL_05425  sulfur oxidation protein 1 [KO:K17223] [EC:2.8.5.2]
AXYL_05428  Tat pathway signal sequence domain protein 24 [KO:K17226]
AXYL_05427  sulfur oxidation protein SoxZ family protein [KO:K17227]
AXYL_05423  5'-Nucleotidase domain protein [KO:K17224] [EC:3.1.6.20]
AXYL_05430  sulfite-dehydrogenase [KO:K17225]
AXYL_05429  cytochrome c-552 2 [KO:K22622] [EC:1.8.2.6]
AXYL_04194  flavodoxin family protein [KO:K00380] [EC:1.8.1.2]
AXYL_00515  cysI; sulfite reductase [KO:K00381] [EC:1.8.1.2]
AXYL_06197  pyridine nucleotide-disulfide oxidoreductase family protein 10 [KO:K17218] [EC:1.8.5.4]
AXYL_04215  pyridine nucleotide-disulfide oxidoreductase family protein 5 [KO:K17218] [EC:1.8.5.4]
AXYL_05431  sulfide dehydrogenase [flavoCytochrome c] flavoprotein chain [KO:K17229] [EC:1.8.2.3]
AXYL_05432  hypothetical protein [KO:K17230]
AXYL_02440  molybdopterin dinucleotide binding domain protein [KO:K08357]
AXYL_02438  sulfur reductase FeS subunit [KO:K08358]
AXYL_02439  ttrC; tetrathionate reductase complex subunit C [KO:K08359]
AXYL_01813  rhodanese-like domain protein 1 [KO:K01011] [EC:2.8.1.1 2.8.1.2]
AXYL_04473  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
AXYL_00476  metX1; homoserine O-acetyltransferase 1 [KO:K00641] [EC:2.3.1.31 2.3.1.46]
AXYL_05212  AMP-binding enzyme family protein 24 [KO:K20034] [EC:6.2.1.44]
AXYL_02383  AMP-binding enzyme family protein 8 [KO:K20034] [EC:6.2.1.44]
AXYL_01739  acyl-CoA dehydrogenase, middle domain protein 5 [KO:K20035] [EC:1.3.99.41]
AXYL_02382  acyl-CoA dehydrogenase, middle domain protein 6 [KO:K20035] [EC:1.3.99.41]
AXYL_00254  acyl-CoA dehydrogenase, middle domain protein 1 [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
axy00260  Glycine, serine and threonine metabolism
axy00270  Cysteine and methionine metabolism
axy00680  Methane metabolism
KO pathway
ko00920   
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