KEGG   PATHWAY: bamc02010
Entry
bamc02010                   Pathway                                
Name
ABC transporters - Bacillus amyloliquefaciens CC178
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
bamc02010  ABC transporters
bamc02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Bacillus amyloliquefaciens CC178 [GN:bamc]
Gene
U471_08880  ssuA [KO:K15553]
U471_08890  ssuC [KO:K15554]
U471_08860  ssuB [KO:K15555] [EC:7.6.2.14]
U471_31650  hypothetical protein [KO:K02020]
U471_31660  molybdate transport system permease protein [KO:K02018]
U471_02830  opuAC [KO:K02002]
U471_02820  opuAB [KO:K02001]
U471_02810  opuAA [KO:K02000] [EC:7.6.2.9]
U471_32180  opuBC [KO:K05845]
U471_32230  periplasmic transport protein OpuCC [KO:K05845]
U471_32170  opuBD [KO:K05846]
U471_32190  opuBB [KO:K05846]
U471_32220  binding-protein-dependent transport system inner membrane protein OpuCD [KO:K05846]
U471_32240  opuCB [KO:K05846]
U471_32200  opuBA [KO:K05847] [EC:7.6.2.9]
U471_32250  hypothetical protein [KO:K05847] [EC:7.6.2.9]
U471_37560  msmX [KO:K10112] [EC:7.5.2.-]
U471_30680  hypothetical protein [KO:K10112] [EC:7.5.2.-]
U471_28350  msmE [KO:K10117]
U471_30730  hypothetical protein [KO:K10117]
U471_28370  amyD [KO:K10118]
U471_30720  multiple sugar transport system permease [KO:K10118]
U471_28380  amyC [KO:K10119]
U471_30710  multiple sugar transport system permease [KO:K10119]
U471_26810  araN [KO:K17234]
U471_26800  araP [KO:K17235]
U471_26790  araQ [KO:K17236]
U471_10990  hypothetical protein [KO:K07335]
U471_29650  basic membrane protein [KO:K07335]
U471_29680  ABC transporter permease [KO:K23535]
U471_29690  branched-chain amino acid transport system / permease component [KO:K23536]
U471_29670  hypothetical protein [KO:K23537]
U471_34470  hypothetical protein [KO:K10439]
U471_34460  ribose transport system permease protein rbsC [KO:K10440]
U471_34450  rbsA [KO:K10441] [EC:7.5.2.7]
U471_34440  D-ribose pyranase [KO:K06726] [EC:5.4.99.62]
U471_24110  phosphate-binding protein pstS 1 PBP 1 [KO:K02040]
U471_24100  yqgH [KO:K02037]
U471_24090  hypothetical protein [KO:K02038]
U471_24070  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
U471_24080  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
U471_25460  glnH [KO:K10039]
U471_25470  glnM [KO:K10040]
U471_25480  glnP [KO:K10040]
U471_25450  hypothetical protein [KO:K10041] [EC:7.4.2.1]
U471_03390  bacterial extracellular solute-binding protein, family 3 [KO:K02424]
U471_03380  cystine ABC transporter permease [KO:K10009]
U471_03370  hypothetical protein [KO:K10010] [EC:7.4.2.1]
U471_31990  hypothetical protein [KO:K16956]
U471_31980  hypothetical protein [KO:K16957]
U471_31970  hypothetical protein [KO:K16958]
U471_31960  hypothetical protein [KO:K16959]
U471_31950  hypothetical protein [KO:K16960] [EC:7.4.2.1]
U471_03540  yxeM [KO:K16961]
U471_03550  binding-protein-dependent transport system inner membrane component [KO:K16962]
U471_03560  hypothetical protein [KO:K16963]
U471_23030  yqiX [KO:K23059]
U471_23020  binding-protein-dependent transport system inner membrane component [KO:K17077]
U471_23010  polar amino acid transport system ATP-binding protein [KO:K23060] [EC:7.4.2.1]
U471_30900  D-methionine-binding lipoprotein metQ [KO:K02073]
U471_09190  hypothetical protein [KO:K02073]
U471_30910  hypothetical protein [KO:K02072]
U471_30930  methionine ABC transporter ATP-binding protein [KO:K02071]
U471_11400  hypothetical protein [KO:K15580]
U471_11410  peptide ABC transporter permease [KO:K15581]
U471_11420  hypothetical protein [KO:K15582]
U471_11430  peptide ABC transporter ATP-binding protein [KO:K15583]
U471_11440  hypothetical protein [KO:K10823]
U471_12950  dppE [KO:K16199]
U471_12920  dipeptide transport system permease protein dppB [KO:K16200]
U471_12930  peptide/nickel transport system permease protein [KO:K16201]
U471_12940  hypothetical protein [KO:K16202]
U471_02700  zinc transport system substrate-binding protein [KO:K09815]
U471_02720  ABC 3 transport family protein [KO:K09816]
U471_02710  hypothetical protein [KO:K09817] [EC:7.2.2.20]
U471_10490  hypothetical protein [KO:K03523]
U471_30150  yuiG [KO:K03523]
U471_13240  hypothetical protein [KO:K16785]
U471_01470  ybaF [KO:K16785]
U471_01450  cobalt transporter ATP-binding subunit [KO:K16786] [EC:7.-.-.-]
U471_01460  ABC efflux transporter ATP-binding protein [KO:K16787] [EC:7.-.-.-]
U471_34110  hypothetical protein [KO:K09692]
U471_34100  teichoic acid export protein ATP-binding subunit [KO:K09693] [EC:7.5.2.4]
U471_28490  bceB [KO:K11632]
U471_01910  ABC-type transport system,permease [KO:K11632]
U471_28500  bceA [KO:K11631]
U471_01900  peptide ABC transporter ATPase [KO:K11631]
U471_38260  mrsG [KO:K20460]
U471_38270  mrsE [KO:K20461]
U471_38250  mrsF [KO:K20459]
U471_32150  spaE [KO:K20491]
U471_32140  spaG [KO:K20492]
U471_32160  spaF [KO:K20490]
U471_33670  ftsX-like permease family protein [KO:K09811]
U471_33680  ABC transporter [KO:K09812]
U471_28530  hypothetical protein [KO:K16918]
U471_28550  hypothetical protein [KO:K16919]
U471_28560  hypothetical protein [KO:K16919]
U471_28570  hypothetical protein [KO:K16919]
U471_28580  ABC transporter [KO:K16921]
U471_28540  ABC transporter [KO:K16920]
U471_09800  yheI [KO:K18889]
U471_09810  hypothetical protein [KO:K18890]
U471_33320  hypothetical protein [KO:K18104] [EC:7.6.2.2]
U471_08260  hypothetical protein [KO:K18887]
U471_08270  hypothetical protein [KO:K18888]
U471_37480  cydD [KO:K16012]
U471_37490  cydC [KO:K16013]
U471_05710  expZ [KO:K18231]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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