KEGG   PATHWAY: baq03030
Entry
baq03030                    Pathway                                
Name
DNA replication - Bacillus velezensis CAU B946
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
baq03030  DNA replication
baq03030

Organism
Bacillus velezensis CAU B946 [GN:baq]
Gene
BACAU_2645  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
BACAU_1613  polC; DNA polymerase III PolC [KO:K03763] [EC:2.7.7.7]
BACAU_0020  dnaX; DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
BACAU_0032  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
BACAU_2398  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
BACAU_0002  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
BACAU_3753  dnaC; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
BACAU_2364  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
BACAU_3385  ywpH; Single-stranded DNA-binding protein SSB [KO:K03111]
BACAU_3807  ssb; Single-stranded DNA-binding protein SSB [KO:K03111]
BACAU_2017  ypeP; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
BACAU_2019  rnhA; RNase H [KO:K03469] [EC:3.1.26.4]
BACAU_1560  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
BACAU_2586  rnhC; ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
BACAU_2630  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
BACAU_0673  ligA; DNA ligase (NAD+) [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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