KEGG   PATHWAY: bceo00920
Entry
bceo00920                   Pathway                                
Name
Sulfur metabolism - Burkholderia cenocepacia H111
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
bceo00920  Sulfur metabolism
bceo00920

Module
bceo_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:bceo00920]
Other DBs
GO: 0006790
Organism
Burkholderia cenocepacia H111 [GN:bceo]
Gene
I35_3019  cysP; Sulfate and thiosulfate binding protein CysP [KO:K02048]
I35_1562  cysP; Sulfate and thiosulfate binding protein CysP [KO:K23163]
I35_1563  cysT; Sulfate transport system permease protein CysT [KO:K02046]
I35_1564  cysW; Sulfate transport system permease protein CysW [KO:K02047]
I35_1565  cysA; Sulfate and thiosulfate import ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
I35_2954  tauA; Taurine-binding periplasmic protein TauA [KO:K15551]
I35_2952  tauC; Taurine transport system permease protein TauC [KO:K15552]
I35_2953  tauB; ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
I35_1450  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_7893  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_4962  Taurine transporter substrate-binding protein [KO:K15553]
I35_4970  Alkanesulfonates-binding protein [KO:K15553]
I35_4450  Alkanesulfonates-binding protein [KO:K15553]
I35_7361  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_7455  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_5237  Alkanesulfonates-binding protein [KO:K15553]
I35_4974  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_5422  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_3280  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_4515  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_5241  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_7464  Taurine-binding periplasmic protein TauA [KO:K15553]
I35_1976  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
I35_5240  Alkanesulfonates transport system permease protein [KO:K15554]
I35_1468  ssuC; Alkanesulfonates transport system permease protein [KO:K15554]
I35_4968  Alkanesulfonates transport system permease protein [KO:K15554]
I35_4969  Alkanesulfonates transport system permease protein [KO:K15554]
I35_4448  Alkanesulfonates transport system permease protein [KO:K15554]
I35_4449  Alkanesulfonates transport system permease protein [KO:K15554]
I35_7360  Alkanesulfonates transport system permease protein [KO:K15554]
I35_7462  Taurine transport system permease protein TauC [KO:K15554]
I35_3278  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [KO:K15554]
I35_1977  Alkanesulfonates transport system permease protein [KO:K15554]
I35_1469  ssuB; Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB [KO:K15555] [EC:7.6.2.14]
I35_4967  Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB [KO:K15555] [EC:7.6.2.14]
I35_7359  Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB [KO:K15555] [EC:7.6.2.14]
I35_7463  Taurine transport ATP-binding protein TauB [KO:K15555] [EC:7.6.2.14]
I35_5239  Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB [KO:K15555] [EC:7.6.2.14]
I35_3279  ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [KO:K15555] [EC:7.6.2.14]
I35_1978  Urea carboxylase-related ABC transporter, ATPase protein [KO:K15555] [EC:7.6.2.14]
I35_1467  ssuD; Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
I35_4452  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
I35_5421  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
I35_5243  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
I35_7050  msuE; FMN reductase [KO:K00299] [EC:1.5.1.38]
I35_6313  putative NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
I35_2189  cysNC; Sulfate adenylyltransferase subunit 1 [KO:K00955] [EC:2.7.7.4 2.7.1.25]
I35_2541  cysN; Sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
I35_2542  cysD1; Sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
I35_2188  cysD; Sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
I35_0640  Adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
I35_2543  cysH; Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin] [KO:K00390] [EC:1.8.4.8 1.8.4.10]
I35_5021  Anaerobic dimethyl sulfoxide reductase chain A [KO:K21307] [EC:1.8.5.6]
I35_5022  Anaerobic dimethyl sulfoxide reductase chain B [KO:K21308]
I35_5023  dmsC; Anaerobic dimethyl sulfoxide reductase chain C [KO:K21309]
I35_7458  Sulfur oxidation molybdopterin C protein [KO:K17225]
I35_7459  Sulfite dehydrogenase cytochrome subunit SoxD [KO:K22622] [EC:1.8.2.6]
I35_5545  Assimilatory nitrate reductase large subunit [KO:K00380] [EC:1.8.1.2]
I35_5537  Sulfite reductase [NADPH] hemoprotein beta-component [KO:K00381] [EC:1.8.1.2]
I35_2545  cysI; Sulfite reductase [NADPH] hemoprotein beta-component [KO:K00381] [EC:1.8.1.2]
I35_1735  Oxidoreductase (flavoprotein) [KO:K17218] [EC:1.8.5.4]
I35_1736  Oxidoreductase (flavoprotein) [KO:K17218] [EC:1.8.5.4]
I35_6562  Zn-dependent hydrolases, including glyoxylases [KO:K17725] [EC:1.13.11.18]
I35_4825  Thiosulfate sulfurtransferase, rhodanese [KO:K01011] [EC:2.8.1.1 2.8.1.2]
I35_4053  srpH; Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
I35_2083  Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
I35_4432  Serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
I35_3172  metX; Homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
I35_4921  metZ; O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
I35_2643  selenium binding protein, putative [KO:K17285] [EC:1.8.3.4]
I35_7051  Coenzyme F420-dependent N5; sulfonate monooxygenase [KO:K17228] [EC:1.14.14.35]
I35_1901  Medium-chain-fatty-acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
I35_5277  hypothetical protein [KO:K20034] [EC:6.2.1.44]
I35_7775  Acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
I35_2784  Acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
bceo00260  Glycine, serine and threonine metabolism
bceo00270  Cysteine and methionine metabolism
bceo00680  Methane metabolism
bceo00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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