KEGG   PATHWAY: bdi04814
Entry
bdi04814                    Pathway                                
Name
Motor proteins - Brachypodium distachyon (stiff brome)
Class
Cellular Processes; Cell motility
Pathway map
bdi04814  Motor proteins
bdi04814

Organism
Brachypodium distachyon (stiff brome) [GN:bdi]
Gene
100831038  uncharacterized protein LOC100831038 [KO:K10418]
100822113  dynein light chain 1, cytoplasmic [KO:K10418]
100846114  dynein light chain LC6, flagellar outer arm [KO:K10418]
100840538  dynein light chain 1, cytoplasmic [KO:K10418]
100824452  dynein light chain 4, axonemal [KO:K10418]
112271156  dynein light chain LC6, flagellar outer arm-like [KO:K10418]
100842152  titin isoform X1 [KO:K10418]
100836528  LOW QUALITY PROTEIN: uncharacterized protein LOC100836528 [KO:K10364]
100831673  probable F-actin-capping protein subunit beta [KO:K10365]
100827816  tubulin alpha-2 chain [KO:K07374]
100835359  tubulin alpha-2 chain [KO:K07374]
100821477  tubulin alpha-1 chain [KO:K07374]
100846768  tubulin alpha-1 chain [KO:K07374]
100829397  tubulin beta-3 chain [KO:K07375]
100834494  tubulin beta-2 chain [KO:K07375]
100839446  tubulin beta-2 chain [KO:K07375]
100834775  LOW QUALITY PROTEIN: tubulin beta chain-like [KO:K07375]
100842099  tubulin beta-3 chain [KO:K07375]
100843456  tubulin beta-4 chain [KO:K07375]
100836144  tubulin beta-5 chain [KO:K07375]
100830051  tubulin beta-4 chain [KO:K07375]
100843442  tubulin beta chain [KO:K07375]
100837257  tubulin gamma-2 chain [KO:K10389]
100825688  kinesin-like protein KIN-5B isoform X1 [KO:K10398]
100829843  kinesin-like protein KIN-5A [KO:K10398]
100827675  kinesin-like protein KIN-5A [KO:K10398]
100834413  kinesin-like protein KIN-5C [KO:K10398]
100846010  kinesin-like protein KIN-7D, chloroplastic [KO:K11498]
100832781  kinesin-like protein KIN-7K, chloroplastic [KO:K11498]
100834389  kinesin-like protein KIN-7A [KO:K11498]
100845290  kinesin-like protein KIN-7A [KO:K11498]
100821877  kinesin-like protein KIN-7F [KO:K11498]
100835018  kinesin-like protein KIN-7C isoform X2 [KO:K11498]
100839948  kinesin-like protein KIN-7L [KO:K11498]
100836602  kinesin-like protein KIN-7E, chloroplastic isoform X2 [KO:K11498]
100840566  kinesin-like protein KIN-7A [KO:K11498]
100828626  kinesin-like protein KIN-7I isoform X9 [KO:K11498]
100828907  LOW QUALITY PROTEIN: kinesin-like protein KIN-7H [KO:K11498]
100821758  LOW QUALITY PROTEIN: kinesin-like protein KIN-7J [KO:K11498]
100834705  kinesin-like protein KIN-8A [KO:K26157]
100820841  kinesin-like protein KIN-8B [KO:K26157]
100842131  kinesin-like protein KIN-10C [KO:K10403]
100843836  kinesin-like protein KIN-10B [KO:K10403]
100843534  kinesin-like protein KIN-12C [KO:K10400]
100835055  kinesin-like protein KIN-12G [KO:K10400]
100845643  kinesin-like protein KIN-12E isoform X2 [KO:K10400]
100842573  kinesin-like protein KIN-12B [KO:K10400]
100834164  kinesin-like protein KIN-12A [KO:K10400]
100844828  kinesin-like protein KIN-12F isoform X1 [KO:K10400]
100838180  kinesin-like protein KIN-13B [KO:K10393]
100821091  kinesin-like protein KIN-13A [KO:K10393]
100846194  kinesin-like protein KIN-13A [KO:K10393]
100834158  kinesin-like protein KIN-14H [KO:K10405]
100824487  kinesin-like protein KIN-14B isoform X1 [KO:K10405]
100824014  kinesin-like protein KIN-14N [KO:K10405]
100832207  kinesin-like protein KIN-14F isoform X1 [KO:K10406]
100826059  kinesin-like protein KIN-14P [KO:K10406]
100832573  kinesin-like protein KIN-14Q [KO:K10406]
100824605  kinesin-like protein KIN-14D isoform X1 [KO:K10406]
100825500  kinesin-like protein KIN-14K [KO:K10406]
100828795  kinesin-like protein KIN-14C isoform X3 [KO:K10406]
100825805  kinesin-like protein KIN-14A [KO:K10406]
100837030  kinesin-like protein KIN-14M isoform X2 [KO:K10406]
100840250  kinesin-like protein KIN-14F [KO:K10406]
100824176  kinesin-like protein KIN-14J [KO:K10406]
100824880  kinesin-like protein KIN-14E isoform X2 [KO:K10406]
100838849  kinesin-like protein KIN-14R [KO:K10406]
100828969  myosin-3 isoform X2 [KO:K10357]
100843681  myosin-6 [KO:K10357]
100839752  myosin-6 [KO:K10357]
100826389  myosin-12 isoform X2 [KO:K10357]
100823871  myosin-17 isoform X1 [KO:K10357]
100836631  myosin-11 isoform X2 [KO:K10357]
100822132  myosin-8 isoform X1 [KO:K10357]
100845088  protein OPAQUE1 [KO:K10357]
100834758  myosin-11 isoform X1 [KO:K10357]
100825413  myosin-17 [KO:K10357]
100821905  actin-7 [KO:K10355]
100827534  actin-1 [KO:K10355]
100828515  actin-2 [KO:K10355]
100831731  actin-97 [KO:K10355]
100834364  actin-3 [KO:K10355]
100834406  actin-7 [KO:K10355]
100841760  actin-1 [KO:K10355]
100846890  actin-3 [KO:K10355]
Reference
  Authors
Hirokawa N, Niwa S, Tanaka Y
  Title
Molecular motors in neurons: transport mechanisms and roles in brain function, development, and disease.
  Journal
Neuron 68:610-38 (2010)
DOI:10.1016/j.neuron.2010.09.039
Reference
PMID:25470043 (PDB:4RH7)
  Authors
Schmidt H, Zalyte R, Urnavicius L, Carter AP
  Title
Structure of human cytoplasmic dynein-2 primed for its power stroke.
  Journal
Nature 518:435-438 (2015)
DOI:10.1038/nature14023
Reference
PMID:22398446 (PDB:3VKG 3VKH)
  Authors
Kon T, Oyama T, Shimo-Kon R, Imamula K, Shima T, Sutoh K, Kurisu G
  Title
The 2.8 A crystal structure of the dynein motor domain.
  Journal
Nature 484:345-50 (2012)
DOI:10.1038/nature10955
Reference
PMID:22997337 (PDB:3J1T 3J1U)
  Authors
Redwine WB, Hernandez-Lopez R, Zou S, Huang J, Reck-Peterson SL, Leschziner AE
  Title
Structural basis for microtubule binding and release by dynein.
  Journal
Science 337:1532-1536 (2012)
DOI:10.1126/science.1224151
Reference
  Authors
Gibbs KL, Greensmith L, Schiavo G
  Title
Regulation of Axonal Transport by Protein Kinases.
  Journal
Trends Biochem Sci 40:597-610 (2015)
DOI:10.1016/j.tibs.2015.08.003
Reference
PMID:28602352 (PDB:5NUG 5NVS 5NVU 5NW4)
  Authors
Zhang K, Foster HE, Rondelet A, Lacey SE, Bahi-Buisson N, Bird AW, Carter AP
  Title
Cryo-EM Reveals How Human Cytoplasmic Dynein Is Auto-inhibited and Activated.
  Journal
Cell 169:1303-1314.e18 (2017)
DOI:10.1016/j.cell.2017.05.025
Reference
PMID:25814576 (PDB:5ADX 5AFR 5AFU)
  Authors
Urnavicius L, Zhang K, Diamant AG, Motz C, Schlager MA, Yu M, Patel NA, Robinson CV, Carter AP
  Title
The structure of the dynactin complex and its interaction with dynein.
  Journal
Science 347:1441-1446 (2015)
DOI:10.1126/science.aaa4080
Reference
PMID:29420470 (PDB:5OWO 6F1T 6F1U 6F1V 6F1Y 6F1Z 6F38 6F3A)
  Authors
Urnavicius L, Lau CK, Elshenawy MM, Morales-Rios E, Motz C, Yildiz A, Carter AP
  Title
Cryo-EM shows how dynactin recruits two dyneins for faster movement.
  Journal
Nature 554:202-206 (2018)
DOI:10.1038/nature25462
Reference
  Authors
Reck-Peterson SL, Redwine WB, Vale RD, Carter AP
  Title
The cytoplasmic dynein transport machinery and its many cargoes.
  Journal
Nat Rev Mol Cell Biol 19:382-398 (2018)
DOI:10.1038/s41580-018-0004-3
Reference
PMID:23434508 (PDB:3J2U)
  Authors
Asenjo AB, Chatterjee C, Tan D, DePaoli V, Rice WJ, Diaz-Avalos R, Silvestry M, Sosa H
  Title
Structural model for tubulin recognition and deformation by kinesin-13 microtubule depolymerases.
  Journal
Cell Rep 3:759-68 (2013)
DOI:10.1016/j.celrep.2013.01.030
Reference
PMID:10338210 (PDB:1B7T)
  Authors
Houdusse A, Kalabokis VN, Himmel D, Szent-Gyorgyi AG, Cohen C
  Title
Atomic structure of scallop myosin subfragment S1 complexed with MgADP: a novel conformation of the myosin head.
  Journal
Cell 97:459-70 (1999)
DOI:10.1016/s0092-8674(00)80756-4
Reference
PMID:9428521 (PDB:3KIN)
  Authors
Kozielski F, Sack S, Marx A, Thormahlen M, Schonbrunn E, Biou V, Thompson A, Mandelkow EM, Mandelkow E
  Title
The crystal structure of dimeric kinesin and implications for microtubule-dependent motility.
  Journal
Cell 91:985-94 (1997)
DOI:10.1016/s0092-8674(00)80489-4
Reference
PMID:8316857 (PDB:2MYS)
  Authors
Rayment I, Rypniewski WR, Schmidt-Base K, Smith R, Tomchick DR, Benning MM, Winkelmann DA, Wesenberg G, Holden HM
  Title
Three-dimensional structure of myosin subfragment-1: a molecular motor.
  Journal
Science 261:50-8 (1993)
DOI:10.1126/science.8316857
Reference
  Authors
Parker D, Bryant Z, Delp SL
  Title
Coarse-Grained Structural Modeling of Molecular Motors Using Multibody Dynamics.
  Journal
Cell Mol Bioeng 2:366-374 (2009)
DOI:10.1007/s12195-009-0084-4
Reference
  Authors
Dominguez R, Holmes KC
  Title
Actin structure and function.
  Journal
Annu Rev Biophys 40:169-86 (2011)
DOI:10.1146/annurev-biophys-042910-155359
Reference
PMID:31919429 (PDB:6KN7 6KN8)
  Authors
Yamada Y, Namba K, Fujii T
  Title
Cardiac muscle thin filament structures reveal calcium regulatory mechanism.
  Journal
Nat Commun 11:153 (2020)
DOI:10.1038/s41467-019-14008-1
Reference
  Authors
Kruppa AJ, Buss F
  Title
Motor proteins at the mitochondria-cytoskeleton interface.
  Journal
J Cell Sci 134:239092 (2021)
DOI:10.1242/jcs.226084
KO pathway
ko04814   
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