KEGG   PATHWAY: beg03030
Entry
beg03030                    Pathway                                
Name
DNA replication - Bacteroides eggerthii
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
beg03030  DNA replication
beg03030

Organism
Bacteroides eggerthii [GN:beg]
Gene
INE88_00162  exoX; Exodeoxyribonuclease 10 [KO:K02342] [EC:2.7.7.7]
INE88_00368  Bacterial DNA polymerase III alpha subunit finger domain protein [KO:K02337] [EC:2.7.7.7]
INE88_00372  Bacterial DNA polymerase III alpha NTPase domain protein [KO:K02337] [EC:2.7.7.7]
INE88_02330  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
INE88_01311  DNA polymerase III, delta subunit [KO:K02343] [EC:2.7.7.7]
INE88_02197  DNA polymerase III, delta subunit [KO:K02341] [EC:2.7.7.7]
INE88_03839  putative protein YqeN [KO:K02340] [EC:2.7.7.7]
INE88_00163  dnaN; Beta sliding clamp [KO:K02338] [EC:2.7.7.7]
INE88_00739  dnaC_1; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
INE88_01113  dnaC_2; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
INE88_03967  dnaC_3; Replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
INE88_00373  Toprim-like protein [KO:K02316] [EC:2.7.7.101]
INE88_01192  DNA primase catalytic core, N-terminal domain [KO:K02316] [EC:2.7.7.101]
INE88_03596  DNA primase catalytic core, N-terminal domain [KO:K02316] [EC:2.7.7.101]
INE88_00053  Single-strand binding protein family protein [KO:K03111]
INE88_00525  ssb_1; Single-stranded DNA-binding protein [KO:K03111]
INE88_02722  Single-strand binding protein family protein [KO:K03111]
INE88_04423  Single-strand binding protein family protein [KO:K03111]
INE88_00138  Single-strand binding protein family protein [KO:K03111]
INE88_02500  Single-strand binding protein family protein [KO:K03111]
INE88_02727  ssb_2; Single-stranded DNA-binding protein [KO:K03111]
INE88_04415  Single-strand binding protein family protein [KO:K03111]
INE88_00496  rnhA_1; Ribonuclease H [KO:K03469] [EC:3.1.26.4]
INE88_01660  rnhA_2; Ribonuclease H [KO:K03469] [EC:3.1.26.4]
INE88_01638  rnhB; Ribonuclease HII [KO:K03470] [EC:3.1.26.4]
INE88_01743  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
INE88_03844  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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