KEGG   PATHWAY: boe00195
Entry
boe00195                    Pathway                                
Name
Photosynthesis - Brassica oleracea (wild cabbage)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
boe00195  Photosynthesis
boe00195

Organism
Brassica oleracea (wild cabbage) [GN:boe]
Gene
106315218  photosystem II CP43 reaction center protein-like [KO:K02705]
106344786  photosystem II D2 protein-like [KO:K02706] [EC:1.10.3.9]
106318902  oxygen-evolving enhancer protein 1-1, chloroplastic-like [KO:K02716]
106306585  oxygen-evolving enhancer protein 1-1, chloroplastic-like [KO:K02716]
106301616  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
106327505  oxygen-evolving enhancer protein 1-1, chloroplastic [KO:K02716]
106309075  LOW QUALITY PROTEIN: oxygen-evolving enhancer protein 1-2, chloroplastic [KO:K02716]
106312485  oxygen-evolving enhancer protein 1-2, chloroplastic [KO:K02716]
106337537  psbP-like protein 1, chloroplastic isoform X1 [KO:K02717]
106292482  oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
106311919  oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
106312114  oxygen-evolving enhancer protein 2, chloroplastic isoform X1 [KO:K02717]
106339985  oxygen-evolving enhancer protein 2-1, chloroplastic-like [KO:K02717]
106293267  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
106319244  oxygen-evolving enhancer protein 3-2, chloroplastic [KO:K08901]
106308042  photosynthetic NDH subunit of lumenal location 2, chloroplastic [KO:K08901]
106294407  LOW QUALITY PROTEIN: photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
106313966  oxygen-evolving enhancer protein 3-1, chloroplastic [KO:K08901]
106342083  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
106327532  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
106296569  photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
106300182  photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
106301101  photosystem II 22 kDa protein, chloroplastic [KO:K03542]
106307235  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
106336797  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
106337068  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
106292484  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
106336747  photosystem II reaction center W protein, chloroplastic [KO:K02721]
106300888  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
106321114  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
106300226  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
106307652  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
106343938  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
106342192  photosystem II reaction center PSB28 protein, chloroplastic [KO:K08903]
106303632  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
106319036  photosystem I reaction center subunit II-1, chloroplastic [KO:K02692]
106312628  photosystem I reaction center subunit IV A, chloroplastic-like [KO:K02693]
106314959  photosystem I reaction center subunit IV A, chloroplastic [KO:K02693]
106295588  photosystem I reaction center subunit III, chloroplastic [KO:K02694]
106305209  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
106311390  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
106296411  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
106296615  photosystem I reaction center subunit V, chloroplastic [KO:K08905]
106328748  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
106324076  LOW QUALITY PROTEIN: photosystem I reaction center subunit VI-1, chloroplastic [KO:K02695]
106343360  photosystem I reaction center subunit VI-1, chloroplastic [KO:K02695]
106332078  photosystem I reaction center subunit VI, chloroplastic [KO:K02695]
106300739  LOW QUALITY PROTEIN: photosystem I reaction center subunit VI, chloroplastic [KO:K02695]
106343947  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
106328978  photosystem I reaction center subunit psaK, chloroplastic-like [KO:K02698]
106312617  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
106342762  photosystem I reaction center subunit XI, chloroplastic [KO:K02699]
106324869  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
106335857  photosystem I reaction center subunit N, chloroplastic isoform X1 [KO:K02701]
106318029  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
106307647  photosystem I subunit O-like [KO:K14332]
106295577  photosystem I subunit O [KO:K14332]
106308407  photosystem I subunit O-like [KO:K14332]
106328732  cytochrome b6-f complex iron-sulfur subunit, chloroplastic [KO:K02636] [EC:7.1.1.6]
106315451  cytochrome b6-f complex iron-sulfur subunit, chloroplastic [KO:K02636] [EC:7.1.1.6]
106304787  plastocyanin-like [KO:K02638]
106296673  plastocyanin [KO:K02638]
106309591  plastocyanin [KO:K02638]
106296130  plastocyanin-like [KO:K02638]
106337454  ferredoxin, root R-B1 [KO:K02639]
106294522  LOW QUALITY PROTEIN: ferredoxin-1, chloroplastic [KO:K02639]
106307375  ferredoxin-2, chloroplastic [KO:K02639]
106336930  ferredoxin, root R-B2 [KO:K02639]
106304953  ferredoxin, leaf L-A-like [KO:K02639]
106313124  ferredoxin, leaf L-A-like [KO:K02639]
106337169  ferredoxin, leaf L-A [KO:K02639]
106329261  ferredoxin, root R-B1-like [KO:K02639]
106309438  ferredoxin [KO:K02639]
106312449  ferredoxin-1, chloroplastic [KO:K02639]
106313447  probable ferredoxin-4, chloroplastic [KO:K02639]
106306596  ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic [KO:K02641] [EC:1.18.1.2]
106343230  ferredoxin--NADP reductase, root isozyme 2, chloroplastic [KO:K02641] [EC:1.18.1.2]
106307428  ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
106324632  ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
106318130  ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic [KO:K02641] [EC:1.18.1.2]
106319411  ferredoxin--NADP reductase, root isozyme 1, chloroplastic [KO:K02641] [EC:1.18.1.2]
106319628  cytochrome c6, chloroplastic-like [KO:K08906]
106327863  cytochrome c6, chloroplastic-like [KO:K08906]
106318909  ATP synthase gamma chain 1, chloroplastic [KO:K02115]
106327546  ATP synthase gamma chain 1, chloroplastic-like [KO:K02115]
106309513  ATP synthase gamma chain 2, chloroplastic [KO:K02115]
106335613  ATP synthase gamma chain 1, chloroplastic [KO:K02115]
106301180  ATP synthase subunit delta, chloroplastic-like [KO:K02113]
106313206  ATP synthase subunit delta, chloroplastic [KO:K02113]
106336515  ATP synthase subunit delta, chloroplastic-like [KO:K02113]
106339914  ATP synthase subunit b', chloroplastic [KO:K02109]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
boe00196  Photosynthesis - antenna proteins
boe00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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