KEGG   PATHWAY: btt03030
Entry
btt03030                    Pathway                                
Name
DNA replication - Bacillus thuringiensis serovar kurstaki HD73
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
btt03030  DNA replication
btt03030

Organism
Bacillus thuringiensis serovar kurstaki HD73 [GN:btt]
Gene
HD73_3886  DNA polymerase III alpha subunit [KO:K02342] [EC:2.7.7.7]
HD73_4899  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
HD73_4101  DNA polymerase III polC-type [KO:K03763] [EC:2.7.7.7]
HD73_0019  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
HD73_0029  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
HD73_4628  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
HD73_3313  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
HD73_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
HD73_5885  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
HD73_1062  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
HD73_4598  DNA primase [KO:K02316] [EC:2.7.7.101]
HD73_2436  single-stranded DNA-binding protein [KO:K03111]
HD73_5890  Single-stranded DNA-binding protein [KO:K03111]
HD73_1830  ribonuclease H [KO:K03469] [EC:3.1.26.4]
HD73_1833  hypothetical protein [KO:K03469] [EC:3.1.26.4]
HD73_4120  Ribonuclease [KO:K03470] [EC:3.1.26.4]
HD73_4850  Ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
HD73_4882  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
HD73_0349  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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