KEGG   PATHWAY: cdrk02010
Entry
cdrk02010                   Pathway                                
Name
ABC transporters - Clostridium drakei
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
cdrk02010  ABC transporters
cdrk02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Clostridium drakei [GN:cdrk]
Gene
B9W14_19155  ABC transporter substrate-binding protein [KO:K15553]
B9W14_19165  ABC transporter permease [KO:K15554]
B9W14_19160  ABC transporter [KO:K15555] [EC:7.6.2.14]
B9W14_07130  ABC transporter substrate-binding protein [KO:K15598]
B9W14_07135  ABC transporter permease [KO:K15599]
B9W14_07140  ABC transporter ATP-binding protein [KO:K15600]
B9W14_17785  molybdate ABC transporter substrate-binding protein [KO:K02020]
B9W14_16250  molybdate ABC transporter substrate-binding protein [KO:K02020]
B9W14_16245  molybdenum ABC transporter permease [KO:K02018]
B9W14_16915  molybdenum ABC transporter permease subunit [KO:K02018]
B9W14_16920  ABC transporter [KO:K02017] [EC:7.3.2.5]
B9W14_09210  ABC transporter substrate-binding protein [KO:K11069]
B9W14_19810  ABC transporter substrate-binding protein [KO:K11069]
B9W14_09220  peptide ABC transporter permease [KO:K11070]
B9W14_19815  spermidine/putrescine ABC transporter permease PotC [KO:K11070]
B9W14_09215  ABC transporter permease [KO:K11071]
B9W14_19820  potB; spermidine/putrescine ABC transporter permease [KO:K11071]
B9W14_09225  polyamine ABC transporter ATP-binding protein [KO:K11072] [EC:7.6.2.11]
B9W14_20935  maltose ABC transporter substrate-binding protein [KO:K15770]
B9W14_21650  ABC transporter substrate-binding protein [KO:K10117]
B9W14_08095  ABC transporter substrate-binding protein [KO:K10546]
B9W14_08105  ABC transporter permease [KO:K10547]
B9W14_08100  ABC transporter ATP-binding protein [KO:K10548] [EC:7.5.2.-]
B9W14_00385  BMP family ABC transporter substrate-binding protein [KO:K07335]
B9W14_22145  ABC transporter permease [KO:K23535]
B9W14_22140  ABC transporter permease [KO:K23536]
B9W14_22150  ABC transporter ATP-binding protein [KO:K23537]
B9W14_24130  D-ribose ABC transporter substrate-binding protein [KO:K10439]
B9W14_12795  LacI family transcriptional regulator [KO:K10439]
B9W14_24135  ribose ABC transporter permease [KO:K10440]
B9W14_12785  rbsC; ribose ABC transporter permease [KO:K10440]
B9W14_24140  D-xylose ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
B9W14_12790  D-xylose ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
B9W14_24145  D-ribose pyranase [KO:K06726] [EC:5.4.99.62]
B9W14_12825  LacI family transcriptional regulator [KO:K23508]
B9W14_12820  LacI family transcriptional regulator [KO:K23508]
B9W14_12810  sugar ABC transporter permease [KO:K23509]
B9W14_12805  sugar ABC transporter permease YjfF [KO:K23509]
B9W14_12815  sugar ABC transporter ATP-binding protein [KO:K10820] [EC:7.5.2.9]
B9W14_18695  ABC transporter substrate-binding protein [KO:K05813]
B9W14_18705  glycerol-3-phosphate ABC transporter permease [KO:K05814]
B9W14_18700  ABC transporter permease [KO:K05815]
B9W14_18685  ABC transporter ATP-binding protein [KO:K05816] [EC:7.6.2.10]
B9W14_05260  phosphate ABC transporter substrate-binding protein [KO:K02040]
B9W14_09700  ABC transporter substrate-binding protein [KO:K02040]
B9W14_05265  phosphate ABC transporter permease subunit PstC [KO:K02037]
B9W14_09705  phosphate ABC transporter permease subunit PstC [KO:K02037]
B9W14_05270  phosphate ABC transporter, permease protein PstA [KO:K02038]
B9W14_09710  phosphate ABC transporter, permease protein PstA [KO:K02038]
B9W14_05275  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
B9W14_09715  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
B9W14_10120  amino acid ABC transporter substrate-binding protein [KO:K10036]
B9W14_10115  amino acid ABC transporter permease [KO:K10037]
B9W14_10110  peptide ABC transporter ATP-binding protein [KO:K10038] [EC:7.4.2.1]
B9W14_17255  amino acid ABC transporter substrate-binding protein [KO:K02424]
B9W14_17270  cysteine ABC transporter substrate-binding protein [KO:K02424]
B9W14_17250  cysteine ABC transporter permease [KO:K10009]
B9W14_17265  ABC transporter permease [KO:K10009]
B9W14_04995  amino acid ABC transporter substrate-binding protein [KO:K16961]
B9W14_04990  ABC transporter permease [KO:K16962]
B9W14_04985  amino acid ABC transporter ATP-binding protein [KO:K16963]
B9W14_17260  amino acid ABC transporter ATP-binding protein [KO:K16963]
B9W14_11510  ABC transporter substrate-binding protein [KO:K01999]
B9W14_19605  methionine ABC transporter substrate-binding protein [KO:K02073]
B9W14_17690  methionine ABC transporter substrate-binding protein [KO:K02073]
B9W14_10210  hypothetical protein [KO:K02073]
B9W14_17040  hypothetical protein [KO:K02073]
B9W14_17060  metal ABC transporter substrate-binding protein [KO:K02073]
B9W14_17205  methionine ABC transporter substrate-binding protein [KO:K02073]
B9W14_19610  methionine ABC transporter permease [KO:K02072]
B9W14_17695  ABC transporter permease [KO:K02072]
B9W14_10205  methionine ABC transporter permease [KO:K02072]
B9W14_17045  methionine ABC transporter permease [KO:K02072]
B9W14_17065  methionine ABC transporter permease [KO:K02072]
B9W14_17210  methionine ABC transporter permease [KO:K02072]
B9W14_19615  methionine ABC transporter ATP-binding protein [KO:K02071]
B9W14_17700  methionine ABC transporter ATP-binding protein [KO:K02071]
B9W14_10200  ABC transporter [KO:K02071]
B9W14_17050  ABC transporter ATP-binding protein [KO:K02071]
B9W14_17070  ABC transporter ATP-binding protein [KO:K02071]
B9W14_17215  ABC transporter [KO:K02071]
B9W14_21175  peptide ABC transporter substrate-binding protein [KO:K15580]
B9W14_21920  peptide ABC transporter substrate-binding protein [KO:K15580]
B9W14_16225  ABC transporter substrate-binding protein [KO:K09815]
B9W14_19410  metal ABC transporter permease [KO:K09816]
B9W14_19405  metal ABC transporter ATP-binding protein [KO:K09817] [EC:7.2.2.20]
B9W14_15715  cobalt ABC transporter [KO:K02009]
B9W14_01850  cobalamin biosynthesis protein CbiM [KO:K02007]
B9W14_15720  cobalamin biosynthesis protein CbiM [KO:K02007]
B9W14_19545  cobalt permease [KO:K02008]
B9W14_15730  cobalt ECF transporter T component CbiQ [KO:K02008]
B9W14_19540  cobalt ABC transporter [KO:K02006]
B9W14_15725  ATP-binding protein [KO:K02006]
B9W14_17600  biotin transporter BioY [KO:K03523]
B9W14_18290  hypothetical protein [KO:K03523]
B9W14_23445  transporter [KO:K16785]
B9W14_11495  cobalt ABC transporter permease [KO:K16785]
B9W14_15790  cobalt transporter [KO:K16785]
B9W14_23455  energy-coupling factor transporter ATPase [KO:K16786] [EC:7.-.-.-]
B9W14_11500  cobalt ABC transporter ATP-binding protein [KO:K16786] [EC:7.-.-.-]
B9W14_23450  energy-coupling factor transporter ATPase [KO:K16787] [EC:7.-.-.-]
B9W14_11505  cobalt ABC transporter ATP-binding protein [KO:K16787] [EC:7.-.-.-]
B9W14_09645  sodium ABC transporter [KO:K09696]
B9W14_09650  ABC transporter [KO:K09697] [EC:7.2.2.4]
B9W14_02625  ABC transporter permease [KO:K19310]
B9W14_07885  ABC transporter permease [KO:K19310]
B9W14_07890  ABC transporter permease [KO:K19310]
B9W14_02630  ABC transporter permease [KO:K19310]
B9W14_02620  bacitracin ABC transporter ATP-binding protein [KO:K19309]
B9W14_07880  bacitracin ABC transporter ATP-binding protein [KO:K19309]
B9W14_10405  ABC transporter permease [KO:K11632]
B9W14_08535  ABC transporter permease [KO:K11632]
B9W14_09840  ABC transporter permease [KO:K11632]
B9W14_08530  bacitracin ABC transporter ATP-binding protein [KO:K11631]
B9W14_10400  bacitracin ABC transporter ATP-binding protein [KO:K11631]
B9W14_09835  bacitracin ABC transporter ATP-binding protein [KO:K11631]
B9W14_02595  ABC transporter permease [KO:K20460]
B9W14_07650  transporter [KO:K20460]
B9W14_02600  hypothetical protein [KO:K20461]
B9W14_07655  ABC transporter permease [KO:K20461]
B9W14_02590  bacitracin ABC transporter ATP-binding protein [KO:K20459]
B9W14_07645  bacitracin ABC transporter ATP-binding protein [KO:K20459]
B9W14_13660  lantibiotic ABC transporter permease [KO:K20491]
B9W14_11730  multidrug ABC transporter permease [KO:K20491]
B9W14_13665  bacteriocin ABC transporter permease [KO:K20492]
B9W14_11735  antibiotic ABC transporter permease [KO:K20492]
B9W14_13655  lantibiotic ABC transporter ATP-binding protein [KO:K20490]
B9W14_11725  lantibiotic ABC transporter ATP-binding protein [KO:K20490]
B9W14_08270  ABC transporter permease [KO:K19084]
B9W14_08265  bacteriocin ABC transporter ATP-binding protein [KO:K19083]
B9W14_23090  ABC transporter permease [KO:K09811]
B9W14_02970  ABC transporter permease [KO:K09811]
B9W14_23095  cell division ATP-binding protein FtsE [KO:K09812]
B9W14_06905  hypothetical protein [KO:K16919]
B9W14_06900  ABC transporter [KO:K16921]
B9W14_13925  ABC transporter ATP-binding protein [KO:K14698] [EC:7.-.-.-]
B9W14_13920  ABC transporter ATP-binding protein [KO:K14699] [EC:7.-.-.-]
B9W14_14160  ABC transporter [KO:K18887]
B9W14_09685  ABC transporter [KO:K18887]
B9W14_15535  multidrug ABC transporter ATP-binding protein [KO:K18887]
B9W14_06920  ABC transporter [KO:K18887]
B9W14_13145  ABC transporter [KO:K18887]
B9W14_01665  ATP-binding protein [KO:K18887]
B9W14_01670  sugar ABC transporter ATP-binding protein [KO:K18888]
B9W14_09690  multidrug ABC transporter ATP-binding protein [KO:K18888]
B9W14_14155  multidrug ABC transporter ATP-binding protein [KO:K18888]
B9W14_13140  ABC transporter [KO:K18888]
B9W14_15540  ABC transporter [KO:K18888]
B9W14_06925  multidrug ABC transporter ATP-binding protein [KO:K18888]
B9W14_07085  ABC-F type ribosomal protection protein [KO:K18231]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
LinkDB

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