KEGG   PATHWAY: cox00920
Entry
cox00920                    Pathway                                
Name
Sulfur metabolism - Cupriavidus oxalaticus
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
cox00920  Sulfur metabolism
cox00920

Module
cox_M00021  Cysteine biosynthesis, serine => cysteine [PATH:cox00920]
cox_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:cox00920]
cox_M00595  Thiosulfate oxidation by SOX complex, thiosulfate => sulfate [PATH:cox00920]
Other DBs
GO: 0006790
Organism
Cupriavidus oxalaticus [GN:cox]
Gene
E0W60_20710  sulfate ABC transporter substrate-binding protein [KO:K23163]
E0W60_20670  cysT; sulfate ABC transporter permease subunit CysT [KO:K02046]
E0W60_20665  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
E0W60_20660  sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
E0W60_03040  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
E0W60_03050  ABC transporter permease subunit [KO:K15552]
E0W60_03045  ATP-binding cassette domain-containing protein [KO:K10831] [EC:7.6.2.7]
E0W60_02825  ABC transporter substrate-binding protein [KO:K15553]
E0W60_20700  sulfonate ABC transporter substrate-binding protein [KO:K15553]
E0W60_04600  nitrate ABC transporter substrate-binding protein [KO:K15553]
E0W60_21380  transporter substrate-binding domain-containing protein [KO:K15553]
E0W60_04590  ABC transporter substrate-binding protein [KO:K15553]
E0W60_02830  ABC transporter permease subunit [KO:K15554]
E0W60_20690  ssuC; aliphatic sulfonate ABC transporter permease SsuC [KO:K15554]
E0W60_04605  ABC transporter permease [KO:K15554]
E0W60_04610  ABC transporter permease [KO:K15554]
E0W60_04580  ABC transporter permease [KO:K15554]
E0W60_21370  ABC transporter permease [KO:K15554]
E0W60_20685  ATP-binding cassette domain-containing protein [KO:K15555] [EC:7.6.2.14]
E0W60_04615  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E0W60_04585  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E0W60_02835  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E0W60_21375  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E0W60_02820  LLM class flavin-dependent oxidoreductase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
E0W60_20695  ssuD; FMNH2-dependent alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
E0W60_20705  ssuE; FMN reductase (NADPH) [KO:K00299] [EC:1.5.1.38]
E0W60_08075  cysN; sulfate adenylyltransferase subunit CysN [KO:K00955] [EC:2.7.7.4 2.7.1.25]
E0W60_24065  sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
E0W60_24070  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
E0W60_08080  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
E0W60_20340  phosphorylase [KO:K00988] [EC:2.7.7.5 2.7.7.53]
E0W60_24075  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
E0W60_09615  oxidase [KO:K05301] [EC:1.8.2.1]
E0W60_29940  oxidoreductase [KO:K21308]
E0W60_26980  soxA; sulfur oxidation c-type cytochrome SoxA [KO:K17222] [EC:2.8.5.2]
E0W60_26975  soxX; sulfur oxidation c-type cytochrome SoxX [KO:K17223] [EC:2.8.5.2]
E0W60_26995  soxY; thiosulfate oxidation carrier protein SoxY [KO:K17226]
E0W60_26990  soxZ; thiosulfate oxidation carrier complex protein SoxZ [KO:K17227]
E0W60_26965  soxB; thiosulfohydrolase SoxB [KO:K17224] [EC:3.1.6.20]
E0W60_27010  soxC; sulfite dehydrogenase [KO:K17225]
E0W60_27005  c-type cytochrome [KO:K22622] [EC:1.8.2.6]
E0W60_05720  sulfite reductase flavoprotein subunit alpha [KO:K00380] [EC:1.8.1.2]
E0W60_20550  nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
E0W60_24085  nitrite/sulfite reductase [KO:K00381] [EC:1.8.1.2]
E0W60_27025  flavocytochrome C [KO:K17229] [EC:1.8.2.3]
E0W60_27030  c-type cytochrome [KO:K17230]
E0W60_27280  MBL fold metallo-hydrolase [KO:K17725] [EC:1.13.11.18]
E0W60_22940  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
E0W60_16325  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
E0W60_22550  PLP-dependent cysteine synthase family protein [KO:K01738] [EC:2.5.1.47]
E0W60_05500  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
E0W60_19220  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
E0W60_11655  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
E0W60_22350  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
E0W60_10220  selenium-binding protein [KO:K17285] [EC:1.8.3.4]
E0W60_17405  fatty-acid--CoA ligase [KO:K20034] [EC:6.2.1.44]
E0W60_10665  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
E0W60_28525  acyl-CoA synthetase [KO:K20034] [EC:6.2.1.44]
E0W60_00535  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
E0W60_12885  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
E0W60_20475  crotonase/enoyl-CoA hydratase family protein [KO:K20036] [EC:4.2.1.155]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
cox00260  Glycine, serine and threonine metabolism
cox00270  Cysteine and methionine metabolism
cox00680  Methane metabolism
KO pathway
ko00920   
LinkDB

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