KEGG   PATHWAY: cya00195
Entry
cya00195                    Pathway                                
Name
Photosynthesis - Synechococcus sp. JA-3-3Ab
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
cya00195  Photosynthesis
cya00195

Module
cya_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:cya00195]
cya_M00161  Photosystem II [PATH:cya00195]
cya_M00163  Photosystem I [PATH:cya00195]
Organism
Synechococcus sp. JA-3-3Ab [GN:cya]
Gene
CYA_1748  psbA-2; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
CYA_1811  psbA-3; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
CYA_1274  psbA-1; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
CYA_1849  psbA-4; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
CYA_0644  psbB; photosystem II P680 chlorophyll A apoprotein [KO:K02704]
CYA_2604  photosystem II protein, PsbB/PsbC family [KO:K02705]
CYA_2359  psbC; photosystem II 44 kDa subunit reaction center protein [KO:K02705]
CYA_2606  photosystem II protein, PsbB/PsbC family [KO:K02705]
CYA_2358  psbD-1; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
CYA_2647  psbD-2; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
CYA_2430  psbE; cytochrome b559, alpha subunit [KO:K02707]
CYA_2429  psbF; cytochrome b559, beta subunit [KO:K02708]
CYA_1326  psbH; photosystem II reaction center protein PsbH [KO:K02709]
CYA_2765  psbI; photosystem II reaction center protein PsbI [KO:K02710]
CYA_2427  psbJ; photosystem II reaction center protein PsbJ [KO:K02711]
CYA_1933  psbK; photosystem II reaction center protein PsbK [KO:K02712]
CYA_2428  psbL; photosystem II reaction center protein PsbL [KO:K02713]
CYA_0642  psbM; photosystem II reaction center protein PsbM [KO:K02714]
CYA_1233  psbO; photosystem II manganese-stabilizing protein [KO:K02716]
CYA_1943  psbP; photosystem II oxygen evolving complex protein PsbP [KO:K02717]
CYA_0645  psbT; photosystem II reaction center protein PsbT [KO:K02718]
CYA_2097  psbU; photosystem II 12 kDa extrinsic protein PsbU [KO:K02719]
CYA_1686  putative cytochrome [KO:K02720]
CYA_1687  cytochrome c550 [KO:K02720]
CYA_2600  psbX-2; photosystem II reaction center protein PsbX [KO:K02722]
CYA_2558  psbX-1; photosystem II reaction center protein PsbX [KO:K02722]
CYA_0259  psbY; photosystem II protein PsbY [KO:K02723]
CYA_0090  conserved hypothetical protein [KO:K02724]
CYA_2798  putative photosystem II protein [KO:K08902]
CYA_1418  psbW; photosystem II reaction center protein PsbW [KO:K08903]
CYA_2521  psaA; photosystem I core protein PsaA [KO:K02689] [EC:1.97.1.12]
CYA_2522  psaB; photosystem I core protein PsaB [KO:K02690] [EC:1.97.1.12]
CYA_0492  psaC; photosystem I iron-sulfur protein PsaC [KO:K02691] [EC:1.97.1.12]
CYA_0536  psaD; photosystem I reaction center subunit II [KO:K02692]
CYA_0204  psaE; photosystem I reaction center subunit IV [KO:K02693]
CYA_0295  psaF; photosystem I reaction center subunit III [KO:K02694]
CYA_0036  psaI; photosystem I reaction center subunit VIII [KO:K02696]
CYA_0294  psaJ; photosystem I reaction center subunit IX [KO:K02697]
CYA_1932  psaK; photosystem I reaction center protein PsaK [KO:K02698]
CYA_0035  psaL-1; photosystem I reaction center subunit XI [KO:K02699]
CYA_0293  psaL-2; photosystem I reaction center subunit XI [KO:K02699]
CYA_2014  psaM; photosystem I reaction center subunit XII [KO:K02700]
CYA_1404  petA; apocytochrome F [KO:K02634]
CYA_1796  petB; cytochrome b6 [KO:K02635]
CYA_1403  petC; cytochrome b6-f complex, iron-sulfur subunit [KO:K02636] [EC:7.1.1.6]
CYA_1153  iron-sulfur cluster-binding protein, Rieske family [KO:K02636] [EC:7.1.1.6]
CYA_1797  petD; cytochrome b6-f complex, subunit IV [KO:K02637]
CYA_2664  petG; cytochrome b6-f complex, subunit V [KO:K02640]
CYA_2357  petM; cytochrome b6-f complex, subunit VII [KO:K02643]
CYA_2776  petN; cytochrome b6-f complex, subunit VIII [KO:K03689]
CYA_1602  petE; plastocyanin [KO:K02638]
CYA_0027  ferredoxin, 2Fe-2S [KO:K02639]
CYA_0289  ferredoxin, 2Fe-2S [KO:K02639]
CYA_1840  ferredoxin, 2Fe-2S [KO:K02639]
CYA_1426  ferredoxin, 2Fe-2S [KO:K02639]
CYA_1257  petH; ferredoxin--NADP reductase [KO:K02641] [EC:1.18.1.2]
CYA_2330  petJ; cytochrome c6 [KO:K08906]
CYA_1542  atpC; ATP synthase F1, epsilon subunit [KO:K02114]
CYA_0420  atpD; ATP synthase F1, beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
CYA_2112  atpG; ATP synthase F1, gamma subunit [KO:K02115]
CYA_2113  atpA; ATP synthase F1, alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
CYA_2114  atpH; ATP synthase F1, delta subunit [KO:K02113]
CYA_2115  atpF; ATP synthase F0, B subunit [KO:K02109]
CYA_2116  ATP synthase F0, B' subunit [KO:K02109]
CYA_2117  atpE; ATP synthase F0, C subunit [KO:K02110]
CYA_2119  atpB; ATP synthase F0, A subunit [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
cya00196  Photosynthesis - antenna proteins
cya00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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