PATHWAY: cyb02010 Help
Entry
Name
ABC transporters - Synechococcus sp. JA-2-3B'a(2-13)
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Synechococcus sp. JA-2-3B'a(2-13) [GN:
cyb ]
Gene
CYB_0239 sbp; sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K23163 ]
CYB_0237 cysT; sulfate ABC transporter, permease protein CysT [KO:K02046 ]
CYB_0236 cysW; sulfate ABC transporter, permease protein CysW [KO:K02047 ]
CYB_0035 nrtA; nitrate ABC transporter, periplasmic nitrate-binding protein NrtA [KO:K15576 ]
CYB_0036 ntrB-1; nitrate ABC transporter, permease protein NrtB [KO:K15577 ]
CYB_0038 ntrD; nitrate ABC transporter, ATP-binding protein NtrD [KO:K15579 ]
CYB_0604 nitrate/nitrite/cyanate ABC transporter (NitT) family, periplasmic substrate-binding protein [KO:K11950 ]
CYB_0603 ntrB-2; nitrate ABC transporter, permease protein [KO:K11951 ]
CYB_0602 ntrC-2; nitrate ABC transporter, ATP-binding proteins NtrC [KO:K11952 ] [EC:7.3.2.-]
CYB_0601 nitrate ABC transporter, ATP-binding protein NtrD [KO:K11953 ] [EC:7.3.2.-]
CYB_0399 modA; molybdate ABC transporter, periplasmic molybdate-binding protein [KO:K02020 ]
CYB_2669 ferric iron uptake ABC transporter (FeT) family, periplasmic substrate binding protein [KO:K02012 ]
CYB_2671 ferric iron uptake ABC transporter (FeT) family, permease protein [KO:K02011 ]
CYB_0505 polyamine transporter, periplasmic polyamine-binding protein [KO:K11069 ]
CYB_2209 potC; spermidine/putrescine ABC transporter, permease protein PotC [KO:K11070 ]
CYB_1299 potB; spermidine/putrescine ABC transporter, permease protein [KO:K11071 ]
CYB_0579 quaternary amine uptake ABC transporter (QAT) family, periplasmic substrate-binding protein [KO:K05845 ]
CYB_0581 quaternary amine uptake ABC transporter (QAT) family, permease protein [KO:K05846 ]
CYB_0029 quaternary amine ABC transporter (QAT) family, permease protein [KO:K05846 ]
CYB_0580 quaternary amine uptake ABC transporter (QAT) family, ATP-binding protein [KO:K05847 ] [EC:7.6.2.9 ]
CYB_1590 carbohydrate uptake ABC transporter-1 (CUT1) family, ATP-binding protein [KO:K10112 ] [EC:7.5.2.-]
CYB_0389 carbohydrate ABC transporter-2 (CUT2) family, permease protein [KO:K23535 ]
CYB_0309 carbohydrate uptake ABC transporter-2 (CUT2) family, permease protein [KO:K23535 ]
CYB_0388 carbohydrate ABC transporter-2 (CUT2) family, permease protein [KO:K23536 ]
CYB_1202 hydrophobic amino acid uptake ABC transporter (HAAT) family, permease protein [KO:K23536 ]
CYB_0390 carbohydrate uptake ABC transporter 2 (CUT2) family, ATP-binding protein [KO:K23537 ]
CYB_2477 ugpB; glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate binding protein [KO:K05813 ]
CYB_2478 upgA; glycerol-3-phosphate ABC transporter, permease protein [KO:K05814 ]
CYB_2893 putative sn-glycerol-3-phosphate ABC transporter, permease protein [KO:K05815 ]
CYB_2551 phosphate uptake transporter (PhoT) ABC transporter family, periplasmic substrate-binding protein [KO:K02040 ]
CYB_1915 pstS-2; phosphate ABC transporter, phosphate-binding protein [KO:K02040 ]
CYB_1077 pstS-1; phosphate ABC transporter, periplasmic phosphate-binding protein [KO:K02040 ]
CYB_2780 pstS-3; phosphate ABC transporter, periplasmic phosphate-binding protein [KO:K02040 ]
CYB_1914 pstC-2; phosphate ABC transporter, permease protein PstC [KO:K02037 ]
CYB_1076 pstC-1; phosphate ABC transporter, permease protein PstC [KO:K02037 ]
CYB_1913 pstA-2; phosphate ABC transporter, permease protein PtsA [KO:K02038 ]
CYB_1075 pstA-1; phosphate ABC transporter, permease protein PtsA [KO:K02038 ]
CYB_1465 phnD-2; phosphonate ABC transporter, periplasmic phosphonate-binding protein [KO:K02044 ]
CYB_1466 phnD; phosphonate ABC transporter, periplasmic phosphonate-binding protein [KO:K02044 ]
CYB_0011 putative phosphonate ABC transporter, phosphonate-binding protein [KO:K02044 ]
CYB_0160 phnD-1; phosphonate ABC tranporter, periplasmic phosphonate-binding protein [KO:K02044 ]
CYB_1468 phnE-2; phosphonate ABC transporter, permease protein [KO:K02042 ]
CYB_1469 phnE-3; phosphonate ABC transporter, permease protein [KO:K02042 ]
CYB_0161 phnE-1; phosphonate ABC transporter, permease protein [KO:K02042 ]
CYB_0932 polar amino amino acid ABC transporter (PAAT) family, periplasmic amino acid-binding protein [KO:K09969 ]
CYB_0931 polar amino amino acid ABC transporter (PAAT) family, permease protein [KO:K09970 ]
CYB_0930 polar amino amino acid ABC transporter (PAAT) family, permease protein [KO:K09971 ]
CYB_0933 polar amino amino acid ABC transporter (PAAT) family, ATP-binding protein [KO:K09972 ] [EC:7.4.2.1 ]
CYB_0772 hydrophobic amino acid ABC transporter (HAAT) family, periplasmic amino acid-binding protein [KO:K01999 ]
CYB_2084 hydrophobic amino acid ABC transporter (HAAT) family, permease protein [KO:K01997 ]
CYB_2083 hydrophobic amino acid ABC transporter (HAAT) family, permease protein [KO:K01998 ]
CYB_0774 hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding protein [KO:K01995 ]
CYB_0775 hydrophobic amino acid ABC transporter (HAAT) family, ATP-binding protein [KO:K01996 ]
CYB_2015 urea ABC transporter, periplasmic urea-binding protein [KO:K11959 ]
CYB_0144 putative zinc ABC transporter, periplasmic zinc-binding protein [KO:K09815 ]
CYB_0147 manganese/zinc/iron chelate ABC transporter (MZT) family, permease protein [KO:K09816 ]
CYB_0145 manganese/zinc/iron chelate ABC ransporter (MZT) family, ATP-binding protein [KO:K09817 ] [EC:7.2.2.20 ]
CYB_2036 cbiQ; cobalt ABC transporter, permease protein CbiQ [KO:K02008 ]
CYB_1798 putative cobalt ABC transporter (CoT) family, ATP-binding protein [KO:K02006 ]
CYB_2631 ABC transporter, ATP-binding protein [KO:K16786 ] [EC:7.-.-.-]
CYB_1898 ABC transporter, ATP-binding protein [KO:K16787 ] [EC:7.-.-.-]
CYB_2383 hydrophobic amino acid uptake transporter (HAAT) ABC transporter family, ATP-binding protein [KO:K06861 ] [EC:7.5.2.5 ]
CYB_1234 heavy metal ABC transporter (HMT) family, permease/ATP-binding protein [KO:K18889 ]
CYB_0181 peroxisomal fatty acyl CoA ABC transporter (P-FAT) family, transmembrane ATP-binding protein [KO:K02471 ]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
KO pathway
LinkDB
All DBs