PATHWAY: ddh02010 Help
Entry
Name
ABC transporters - Desulfitobacterium dehalogenans
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
BRITE hierarchy
Pathway map
Ortholog table
Other DBs
Organism
Desulfitobacterium dehalogenans [GN:
ddh ]
Gene
Desde_3056 ABC transporter, substrate-binding protein, aliphatic sulfonates family [KO:K15553 ]
Desde_0785 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [KO:K15553 ]
Desde_0225 ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component [KO:K15553 ]
Desde_3058 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [KO:K15554 ]
Desde_0226 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [KO:K15554 ]
Desde_0786 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [KO:K15554 ]
Desde_3916 molybdenum ABC transporter, periplasmic molybdate-binding protein [KO:K02020 ]
Desde_2061 ABC-type spermidine/putrescine transport system, permease component II [KO:K11070 ]
Desde_2060 ABC-type spermidine/putrescine transport system, permease component I [KO:K11071 ]
Desde_1841 ABC-type proline/glycine betaine transport system, periplasmic component [KO:K02002 ]
Desde_1842 ABC-type proline/glycine betaine transport system, permease component [KO:K02001 ]
Desde_1792 putative ABC-type transport system, periplasmic component/surface lipoprotein [KO:K07335 ]
Desde_1790 ABC-type uncharacterized transport system, permease component [KO:K23535 ]
Desde_1170 phosphate ABC transporter substrate-binding protein, PhoT family [KO:K02040 ]
Desde_1171 phosphate ABC transporter membrane protein 1, PhoT family [KO:K02037 ]
Desde_1172 phosphate ABC transporter membrane protein 2, PhoT family [KO:K02038 ]
Desde_4064 amino acid ABC transporter substrate-binding protein, PAAT family [KO:K10036 ]
Desde_0969 amino acid ABC transporter substrate-binding protein, PAAT family [KO:K10039 ]
Desde_0971 amino acid ABC transporter membrane protein 2, PAAT family [KO:K10040 ]
Desde_0970 amino acid ABC transporter membrane protein 1, PAAT family [KO:K10040 ]
Desde_1825 amino acid ABC transporter substrate-binding protein, PAAT family [KO:K17073 ]
Desde_1827 amino acid ABC transporter ATP-binding protein, PAAT family [KO:K17076 ]
Desde_3438 amino acid/amide ABC transporter substrate-binding protein, HAAT family [KO:K01999 ]
Desde_4223 amino acid/amide ABC transporter substrate-binding protein, HAAT family [KO:K01999 ]
Desde_3437 amino acid/amide ABC transporter membrane protein 1, HAAT family [KO:K01997 ]
Desde_4222 amino acid/amide ABC transporter membrane protein 1, HAAT family [KO:K01997 ]
Desde_4221 amino acid/amide ABC transporter membrane protein 2, HAAT family [KO:K01998 ]
Desde_3436 amino acid/amide ABC transporter membrane protein 2, HAAT family [KO:K01998 ]
Desde_3435 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family [KO:K01995 ]
Desde_4220 amino acid/amide ABC transporter ATP-binding protein 1, HAAT family [KO:K01995 ]
Desde_4219 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family [KO:K01996 ]
Desde_3434 amino acid/amide ABC transporter ATP-binding protein 2, HAAT family [KO:K01996 ]
Desde_2483 ABC-type oligopeptide transport system, periplasmic component [KO:K15580 ]
Desde_2487 ABC-type dipeptide/oligopeptide/nickel transport system, permease component [KO:K15581 ]
Desde_2486 ABC-type dipeptide/oligopeptide/nickel transport system, permease component [KO:K15582 ]
Desde_2485 oligopeptide/dipeptide ABC transporter, ATP-binding protein [KO:K15583 ]
Desde_2484 oligopeptide/dipeptide ABC transporter, ATP-binding protein [KO:K10823 ]
Desde_1534 ABC-type cobalt transport system, permease component CbiQ [KO:K02008 ]
Desde_3337 ABC-type cobalt transport system, permease component CbiQ [KO:K16785 ]
Desde_0919 ABC-type cobalt transport system, permease component CbiQ [KO:K16785 ]
Desde_3843 ABC-type polysaccharide/polyol phosphate export systems, permease component [KO:K09690 ]
Desde_1004 ABC-type transport system involved in cytochrome c biogenesis, permease component [KO:K02194 ]
Desde_1608 ABC-type multidrug transport system, ATPase component [KO:K16907 ] [EC:7.6.2.-]
Desde_0493 putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [KO:K19084 ]
Desde_0492 ABC-type antimicrobial peptide transport system, ATPase component [KO:K19083 ]
Desde_0190 ABC-type transport system involved in multi-copper enzyme maturation, permease component [KO:K19341 ]
Desde_2301 ABC-type multidrug transport system, ATPase and permease component [KO:K18889 ]
Desde_2300 ABC-type multidrug transport system, ATPase and permease component [KO:K18890 ]
Desde_1784 ABC-type multidrug transport system, ATPase and permease component [KO:K18887 ]
Desde_1617 ABC-type multidrug transport system, ATPase and permease component [KO:K18887 ]
Desde_1785 ABC-type multidrug transport system, ATPase and permease component [KO:K18888 ]
Desde_1618 ABC-type multidrug transport system, ATPase and permease component [KO:K18888 ]
Desde_1246 cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydC [KO:K16012 ]
Desde_1245 cysteine export CydDC family ABC transporter permease subunit/ATP-binding protein CydD [KO:K16013 ]
Desde_0993 ATPase component of ABC transporters with duplicated ATPase domain [KO:K18231 ]
Compound
C00093 sn-Glycerol 3-phosphate
C01153 Orthophosphoric monoester
C01181 4-Trimethylammoniobutanoate
C01279 4-Amino-5-hydroxymethyl-2-methylpyrimidine
C03557 2-Aminoethylphosphonate
C03611 Galactose oligosaccharide
C03619 Methyl beta-D-galactoside
C04114 (E)-4-(Trimethylammonio)but-2-enoate
C06705 Capsular polysaccharide
C19872 N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570 alpha-1,5-L-Arabinobiose
C20571 alpha-1,5-L-Arabinotriose
C20572 alpha-1,5-L-Arabinotetraose
Reference
Authors
Tomii K, Kanehisa M.
Title
A comparative analysis of ABC transporters in complete microbial genomes.
Journal
Reference
Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
Journal
Reference
Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
Journal
Reference
Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
Journal
Reference
Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
Journal
Reference
Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
Journal
Reference
Authors
Richard-Fogal CL, Frawley ER, Kranz RG
Title
Topology and function of CcmD in cytochrome c maturation.
Journal
Reference
Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
Journal
Reference
Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
Journal
Reference
Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
Journal
Reference
Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
Journal
KO pathway
LinkDB
All DBs