KEGG   PATHWAY: dzi00195
Entry
dzi00195                    Pathway                                
Name
Photosynthesis - Durio zibethinus (durian)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
dzi00195  Photosynthesis
dzi00195

Module
dzi_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:dzi00195]
dzi_M00161  Photosystem II [PATH:dzi00195]
dzi_M00163  Photosystem I [PATH:dzi00195]
Organism
Durio zibethinus (durian) [GN:dzi]
Gene
36165471  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
111286849  uncharacterized protein LOC111286849 [KO:K02704]
111289161  uncharacterized protein LOC111289161 [KO:K02704]
111289183  uncharacterized protein LOC111289183 [KO:K02704]
111289198  uncharacterized protein LOC111289198 [KO:K02704]
111284105  uncharacterized protein LOC111284105 [KO:K02704]
36165416  psbB; photosystem II 47 kDa protein [KO:K02704]
36165450  psbC; photosystem II 44 kDa protein [KO:K02705]
36165432  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
36165411  psbE; photosystem II protein V [KO:K02707]
36165443  psbF; photosystem II protein VI [KO:K02708]
36165437  psbH; photosystem II protein H [KO:K02709]
36165418  psbI; photosystem II protein I [KO:K02710]
36165493  psbJ; photosystem II protein J [KO:K02711]
36165385  psbK; photosystem II protein K [KO:K02712]
36165406  psbL; photosystem II protein L [KO:K02713]
36165419  psbM; PSII low MW protein M [KO:K02714]
111292198  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
111300762  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
111309815  psbP-like protein 1, chloroplastic [KO:K02717]
111316763  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
111288676  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
111275729  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like isoform X1 [KO:K08901]
111275146  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
111281394  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
111281798  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
111287091  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
111300231  photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
111314980  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
111311233  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
36165460  psbT; photosystem II protein T [KO:K02718]
111283798  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
111283863  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
111305254  photosystem II reaction center W protein, chloroplastic [KO:K02721]
111282754  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
111287064  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
111317459  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
36165435  psbZ; photosystem II protein Z [KO:K02724]
111298455  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
111282937  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
111308441  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
111306142  photosystem II reaction center Psb28 protein [KO:K08903]
111283852  photosystem II reaction center Psb28 protein-like [KO:K08903]
36165459  psaA; photosystem I P700 apoprotein A1 [KO:K02689] [EC:1.97.1.12]
36165467  psaB; photosystem I P700 apoprotein A2 [KO:K02690] [EC:1.97.1.12]
36165461  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
111283755  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
111305203  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
111307323  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
111305369  photosystem I reaction center subunit IV B, chloroplastic-like [KO:K02693]
111314365  photosystem I reaction center subunit IV B, chloroplastic-like [KO:K02693]
111283823  photosystem I reaction center subunit IV B, chloroplastic-like [KO:K02693]
111279057  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
111274779  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
111318574  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
111278719  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
111281078  photosystem I reaction center subunit VI, chloroplastic-like [KO:K02695]
36165442  psaI; photosystem I reaction center subunit VIII [KO:K02696]
36165462  psaJ; photosystem I subunit IX [KO:K02697]
111298787  photosystem I reaction center subunit psaK, chloroplastic-like isoform X1 [KO:K02698]
111308162  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
111282950  photosystem I reaction center subunit psaK, chloroplastic-like [KO:K02698]
111305491  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
111299760  photosystem I reaction center subunit N, chloroplastic [KO:K02701]
111316833  photosystem I reaction center subunit N, chloroplastic-like isoform X1 [KO:K02701]
111292558  photosystem I reaction center subunit N, chloroplastic-like isoform X1 [KO:K02701]
111302072  photosystem I subunit O [KO:K14332]
111284174  uncharacterized protein LOC111284174 [KO:K02634]
36165464  petA; cytochrome f [KO:K02634]
36165465  petB; cytochrome b6 [KO:K02635]
111282552  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
111298614  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
111308428  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
36165448  petD; cytochrome b6/f complex subunit IV [KO:K02637]
36165438  petG; cytochrome b6/f complex subunit V [KO:K02640]
36165384  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
111314772  plastocyanin-like [KO:K02638]
111303803  ferredoxin, root R-B2-like [KO:K02639]
111279110  uncharacterized protein LOC111279110 [KO:K02639]
111296625  ferredoxin-A-like [KO:K02639]
111283117  ferredoxin-A-like [KO:K02639]
111301272  ferredoxin, root R-B2-like [KO:K02639]
111304799  uncharacterized protein LOC111304799 isoform X1 [KO:K02639]
111290414  uncharacterized protein LOC111290414 isoform X1 [KO:K02639]
111308891  ferredoxin-like [KO:K02639]
111286161  ferredoxin, root R-B2 [KO:K02639]
111304342  ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
111300103  ferredoxin--NADP reductase, leaf isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
111275371  ferredoxin--NADP reductase, root-type isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
111281196  ferredoxin--NADP reductase, root isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
111292277  ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like isoform X1 [KO:K02641] [EC:1.18.1.2]
111280450  cytochrome c6, chloroplastic [KO:K08906]
36165453  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
36165434  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
111318812  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
111280275  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
111275672  ATP synthase gamma chain 2, chloroplastic-like [KO:K02115]
36165449  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
111276595  ATP synthase subunit delta, chloroplastic-like [KO:K02113]
111305976  ATP synthase delta chain, chloroplastic-like [KO:K02113]
111315790  uncharacterized protein LOC111315790 [KO:K02109]
111304072  ATP synthase subunit b', chloroplastic-like [KO:K02109]
111285032  LOW QUALITY PROTEIN: ATP synthase subunit b', chloroplastic-like [KO:K02109]
36165428  atpF; ATPase subunit I [KO:K02109]
36165477  atpH; ATPase subunit III [KO:K02110]
36165492  atpI; ATPase subunit IV [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
dzi00196  Photosynthesis - antenna proteins
dzi00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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