KEGG   PATHWAY: fva02010
Entry
fva02010                    Pathway                                
Name
ABC transporters - Fusobacterium varium
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
fva02010  ABC transporters
fva02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Fusobacterium varium [GN:fva]
Gene
FV113G1_08250  ABC transporter substrate-binding protein [KO:K15553]
FV113G1_08230  ABC transporter permease [KO:K15554]
FV113G1_08240  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
FV113G1_20820  modA; Molybdate-binding periplasmic protein precursor [KO:K02020]
FV113G1_20810  putative ABC transporter permease [KO:K02018]
FV113G1_24020  putative ABC transporter periplasmic protein [KO:K02012]
FV113G1_18530  iron ABC transporter substrate-binding protein [KO:K02012]
FV113G1_27370  putative ABC transporter periplasmic binding protein [KO:K02012]
FV113G1_24040  putative ABC transporter permease [KO:K02011]
FV113G1_18520  putative ABC transporter permease [KO:K02011]
FV113G1_27390  putative ABC transporter permease [KO:K02011]
FV113G1_24030  putative ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
FV113G1_18510  putative ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
FV113G1_27380  putative ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
FV113G1_11060  ABC transporter substrate-binding protein [KO:K02064]
FV113G1_14420  ABC transporter permease [KO:K02063]
FV113G1_19480  putative ABC transporter substrate-binding protein [KO:K11069]
FV113G1_10920  spermidine/putrescine ABC transporter permease inner membrane protein [KO:K11070]
FV113G1_10910  potB; spermidine/putrescine ABC transporter permease protein PotB [KO:K11071]
FV113G1_10900  putative ABC transporter ATP-binding protein [KO:K11072] [EC:7.6.2.11]
FV113G1_24870  ABC transporter substrate-binding protein [KO:K02002]
FV113G1_24880  ABC transporter permease [KO:K02001]
FV113G1_24890  ABC transporter ATP-binding protein [KO:K02000] [EC:7.6.2.9]
FV113G1_04650  ABC transporter permease protein [KO:K05845 K05846]
FV113G1_30640  ABC transporter permease [KO:K05845 K05846]
FV113G1_30630  ABC transporter ATP-binding protein [KO:K05847] [EC:7.6.2.9]
FV113G1_04660  ABC transporter ATP-binding protein [KO:K05847] [EC:7.6.2.9]
FV113G1_00940  hypothetical protein [KO:K10117]
FV113G1_30740  ABC transporter periplasmic protein [KO:K10439]
FV113G1_31260  ABC transporter substrate-binding protein [KO:K10439]
FV113G1_19650  ABC transporter periplasmic protein [KO:K10439]
FV113G1_30750  ABC transporter permease [KO:K10440]
FV113G1_31240  ABC transporter permease [KO:K10440]
FV113G1_19640  ABC transporter permease [KO:K10440]
FV113G1_30760  ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
FV113G1_31250  ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
FV113G1_19630  ABC transporter ATP-binding protein [KO:K10441] [EC:7.5.2.7]
FV113G1_19620  rbsD; D-ribose pyranase [KO:K06726] [EC:5.4.99.62]
FV113G1_29540  ABC transporter periplasmic protein [KO:K10540]
FV113G1_29520  mglC; beta-methylgalactoside transporter [KO:K10541]
FV113G1_29530  ABC transporter ATP-binding protein [KO:K10542] [EC:7.5.2.11]
FV113G1_00690  putative ABC transporter periplasmic binding protein [KO:K05813]
FV113G1_00660  putative ABC transporter permease protein [KO:K05814]
FV113G1_00670  putative ABC transporter permease protein [KO:K05815]
FV113G1_00680  putative ABC transporter ATP-binding protein [KO:K05816] [EC:7.6.2.10]
FV113G1_05650  phosphate ABC transporter substrate-binding protein [KO:K02040]
FV113G1_03650  pstS; phosphate ABC transporter, periplasmic component protein PstS [KO:K02040]
FV113G1_05640  phosphate ABC transporter permease [KO:K02037]
FV113G1_03660  pstC; phosphate ABC transporter, permease protein PstC [KO:K02037]
FV113G1_05630  phosphate ABC transporter permease [KO:K02038]
FV113G1_03670  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
FV113G1_05620  phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
FV113G1_03680  pstB; phosphate ABC transporter, ATP-binding protein PstB [KO:K02036] [EC:7.3.2.1]
FV113G1_16590  amino acid ABC transporter substrate-binding protein [KO:K23059]
FV113G1_09020  amino acid ABC transporter substrate-binding protein [KO:K23059]
FV113G1_16570  amino acid ABC transporter permease [KO:K17077]
FV113G1_16580  amino acid ABC transporter ATP-binding protein [KO:K23060] [EC:7.4.2.1]
FV113G1_16440  amino acid binding protein [KO:K01999]
FV113G1_16450  amino acid ABC transporter permease [KO:K01997]
FV113G1_16460  amino acid ABC transporter permease [KO:K01998]
FV113G1_16470  amino acid ABC transporter ATP-binding protein [KO:K01995]
FV113G1_16480  amino acid ABC transporter ATPase [KO:K01996]
FV113G1_03920  ABC-type metal ion transport system, periplasmic component/surface antigen [KO:K02073]
FV113G1_03930  ABC-type metal ion transport system, periplasmic component/surface antigen [KO:K02073]
FV113G1_03910  ABC-type metal ion transport system, permease component [KO:K02072]
FV113G1_03900  ABC-type metal ion transport system, ATPase component [KO:K02071]
FV113G1_31780  putative ABC transporter substrate-binding protein [KO:K15580]
FV113G1_31770  putative ABC transporter permease protein [KO:K15581]
FV113G1_31760  putative ABC transporter permease protein [KO:K15582]
FV113G1_31750  putative ABC transporter ATP-binding protein [KO:K15583]
FV113G1_31740  putative ABC transporter ATP-binding protein [KO:K10823]
FV113G1_02770  putative nickel ABC transporter periplasmic binding protein [KO:K15584]
FV113G1_02760  putative nickel ABC transporter permease [KO:K15585]
FV113G1_02750  putative ABC transporter permease [KO:K15586]
FV113G1_02740  putative ABC transporter ATP-binding protein [KO:K15587] [EC:7.2.2.11]
FV113G1_02730  putative ABC transporter ATP-binding protein [KO:K10824] [EC:7.2.2.11]
FV113G1_12380  zinc ABC transporter [KO:K09817] [EC:7.2.2.20]
FV113G1_33660  ABC transporter permease protein [KO:K16785]
FV113G1_09470  lolE; lipoprotein-releasing system transmembrane protein LolE [KO:K09808]
FV113G1_09480  lolD; Lipoprotein-releasing system ATP-binding protein LolD [KO:K09810] [EC:7.6.2.-]
FV113G1_06940  permease [KO:K07091]
FV113G1_06950  permease [KO:K11720]
FV113G1_06860  putative LPS export ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
FV113G1_02550  hypothetical protein [KO:K09811]
FV113G1_18980  ABC transporter ATP-binding protein [KO:K14698] [EC:7.-.-.-]
FV113G1_18970  ABC transporter ATP-binding protein [KO:K14699] [EC:7.-.-.-]
FV113G1_30120  putative ABC transporter ATP-binding protein [KO:K18887]
FV113G1_30130  putative ABC transporter ATP-binding protein [KO:K18888]
FV113G1_08780  putative ABC transporter ATP-binding protein [KO:K19350]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   
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