PATHWAY: gav01100 Help Entry gav01100                    Pathway                                 Name Metabolic pathways - Gordonia alkanivorans Class BRITE hierarchy Pathway map gav01100   Metabolic pathways Module gav_M00001   Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:gav01100] gav_M00002   Glycolysis, core module involving three-carbon compounds [PATH:gav01100] gav_M00003   Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gav01100] gav_M00004   Pentose phosphate pathway (Pentose phosphate cycle) [PATH:gav01100] gav_M00005   PRPP biosynthesis, ribose 5P => PRPP [PATH:gav01100] gav_M00006   Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:gav01100] gav_M00007   Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:gav01100] gav_M00009   Citrate cycle (TCA cycle, Krebs cycle) [PATH:gav01100] gav_M00010   Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gav01100] gav_M00011   Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gav01100] gav_M00012   Glyoxylate cycle [PATH:gav01100] gav_M00015   Proline biosynthesis, glutamate => proline [PATH:gav01100] gav_M00016   Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:gav01100] gav_M00017   Methionine biosynthesis, aspartate => homoserine => methionine [PATH:gav01100] gav_M00018   Threonine biosynthesis, aspartate => homoserine => threonine [PATH:gav01100] gav_M00019   Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:gav01100] gav_M00020   Serine biosynthesis, glycerate-3P => serine [PATH:gav01100] gav_M00026   Histidine biosynthesis, PRPP => histidine [PATH:gav01100] gav_M00027   GABA (gamma-Aminobutyrate) shunt [PATH:gav01100] gav_M00028   Ornithine biosynthesis, glutamate => ornithine [PATH:gav01100] gav_M00033   Ectoine biosynthesis, aspartate => ectoine [PATH:gav01100] gav_M00048   De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:gav01100] gav_M00049   Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:gav01100] gav_M00050   Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:gav01100] gav_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:gav01100] gav_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:gav01100] gav_M00082   Fatty acid biosynthesis, initiation [PATH:gav01100] gav_M00083   Fatty acid biosynthesis, elongation [PATH:gav01100] gav_M00086   beta-Oxidation, acyl-CoA synthesis [PATH:gav01100] gav_M00087   beta-Oxidation [PATH:gav01100] gav_M00093   Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:gav01100] gav_M00096   C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH:gav01100] gav_M00098   Acylglycerol degradation [PATH:gav01100] gav_M00115   NAD biosynthesis, aspartate => quinolinate => NAD [PATH:gav01100] gav_M00120   Coenzyme A biosynthesis, pantothenate => CoA [PATH:gav01100] gav_M00122   Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH:gav01100] gav_M00123   Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH:gav01100] gav_M00126   Tetrahydrofolate biosynthesis, GTP => THF [PATH:gav01100] gav_M00149   Succinate dehydrogenase, prokaryotes [PATH:gav01100] gav_M00151   Cytochrome bc1 complex respiratory unit [PATH:gav01100] gav_M00155   Cytochrome c oxidase, prokaryotes [PATH:gav01100] gav_M00157   F-type ATPase, prokaryotes and chloroplasts [PATH:gav01100] gav_M00168   CAM (Crassulacean acid metabolism), dark [PATH:gav01100] gav_M00176   Assimilatory sulfate reduction, sulfate => H2S [PATH:gav01100] gav_M00307   Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gav01100] gav_M00364   C10-C20 isoprenoid biosynthesis, bacteria [PATH:gav01100] gav_M00432   Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:gav01100] gav_M00530   Dissimilatory nitrate reduction, nitrate => ammonia [PATH:gav01100] gav_M00549   Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH:gav01100] gav_M00555   Betaine biosynthesis, choline => betaine [PATH:gav01100] gav_M00570   Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:gav01100] gav_M00579   Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:gav01100] gav_M00621   Glycine cleavage system [PATH:gav01100] gav_M00741   Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:gav01100] gav_M00793   dTDP-L-rhamnose biosynthesis [PATH:gav01100] gav_M00844   Arginine biosynthesis, ornithine => arginine [PATH:gav01100] gav_M00846   Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:gav01100] gav_M00854   Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:gav01100] gav_M00881   Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:gav01100] gav_M00899   Thiamine salvage pathway, HMP/HET => TMP [PATH:gav01100] gav_M00909   UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH:gav01100] gav_M00916   Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P [PATH:gav01100] gav_M00926   Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:gav01100] gav_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:gav01100] gav_M00970   Proline degradation, proline => glutamate [PATH:gav01100] gav_M00972   Proline metabolism [PATH:gav01100] Organism Gordonia alkanivorans [GN:gav] Related pathway gav00010   Glycolysis / Gluconeogenesis gav00020   Citrate cycle (TCA cycle) gav00030   Pentose phosphate pathway gav00040   Pentose and glucuronate interconversions gav00051   Fructose and mannose metabolism gav00052   Galactose metabolism gav00053   Ascorbate and aldarate metabolism gav00061   Fatty acid biosynthesis gav00071   Fatty acid degradation gav00074   Mycolic acid biosynthesis gav00100   Steroid biosynthesis gav00121   Secondary bile acid biosynthesis gav00130   Ubiquinone and other terpenoid-quinone biosynthesis gav00190   Oxidative phosphorylation gav00220   Arginine biosynthesis gav00230   Purine metabolism gav00240   Pyrimidine metabolism gav00250   Alanine, aspartate and glutamate metabolism gav00260   Glycine, serine and threonine metabolism gav00261   Monobactam biosynthesis gav00270   Cysteine and methionine metabolism gav00280   Valine, leucine and isoleucine degradation gav00290   Valine, leucine and isoleucine biosynthesis gav00300   Lysine biosynthesis gav00310   Lysine degradation gav00311   Penicillin and cephalosporin biosynthesis gav00330   Arginine and proline metabolism gav00332   Carbapenem biosynthesis gav00340   Histidine metabolism gav00350   Tyrosine metabolism gav00360   Phenylalanine metabolism gav00361   Chlorocyclohexane and chlorobenzene degradation gav00362   Benzoate degradation gav00364   Fluorobenzoate degradation gav00380   Tryptophan metabolism gav00400   Phenylalanine, tyrosine and tryptophan biosynthesis gav00401   Novobiocin biosynthesis gav00410   beta-Alanine metabolism gav00430   Taurine and hypotaurine metabolism gav00450   Selenocompound metabolism gav00460   Cyanoamino acid metabolism gav00470   D-Amino acid metabolism gav00480   Glutathione metabolism gav00500   Starch and sucrose metabolism gav00514   Other types of O-glycan biosynthesis gav00515   Mannose type O-glycan biosynthesis gav00520   Amino sugar and nucleotide sugar metabolism gav00521   Streptomycin biosynthesis gav00523   Polyketide sugar unit biosynthesis gav00525   Acarbose and validamycin biosynthesis gav00541   O-Antigen nucleotide sugar biosynthesis gav00542   O-Antigen repeat unit biosynthesis gav00543   Exopolysaccharide biosynthesis gav00550   Peptidoglycan biosynthesis gav00552   Teichoic acid biosynthesis gav00561   Glycerolipid metabolism gav00562   Inositol phosphate metabolism gav00564   Glycerophospholipid metabolism gav00572   Arabinogalactan biosynthesis - Mycobacterium gav00592   alpha-Linolenic acid metabolism gav00600   Sphingolipid metabolism gav00620   Pyruvate metabolism gav00621   Dioxin degradation gav00622   Xylene degradation gav00623   Toluene degradation gav00625   Chloroalkane and chloroalkene degradation gav00626   Naphthalene degradation gav00627   Aminobenzoate degradation gav00630   Glyoxylate and dicarboxylate metabolism gav00640   Propanoate metabolism gav00643   Styrene degradation gav00650   Butanoate metabolism gav00660   C5-Branched dibasic acid metabolism gav00670   One carbon pool by folate gav00680   Methane metabolism gav00710   Carbon fixation by Calvin cycle gav00720   Other carbon fixation pathways gav00730   Thiamine metabolism gav00740   Riboflavin metabolism gav00750   Vitamin B6 metabolism gav00760   Nicotinate and nicotinamide metabolism gav00770   Pantothenate and CoA biosynthesis gav00780   Biotin metabolism gav00785   Lipoic acid metabolism gav00790   Folate biosynthesis gav00791   Atrazine degradation gav00860   Porphyrin metabolism gav00900   Terpenoid backbone biosynthesis gav00903   Limonene degradation gav00906   Carotenoid biosynthesis gav00907   Pinene, camphor and geraniol degradation gav00910   Nitrogen metabolism gav00920   Sulfur metabolism gav00930   Caprolactam degradation gav00946   Degradation of flavonoids gav00984   Steroid degradation gav00999   Biosynthesis of various plant secondary metabolites gav01040   Biosynthesis of unsaturated fatty acids gav01053   Biosynthesis of siderophore group nonribosomal peptides KO pathway ko01100     LinkDB All DBs

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