KEGG   PATHWAY: gav00020
Entry
gav00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gordonia alkanivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gav00020  Citrate cycle (TCA cycle)
gav00020

Module
gav_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gav00020]
gav_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gav00020]
gav_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gav00020]
gav_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gav00020]
gav_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gav00020]
Other DBs
GO: 0006099
Organism
Gordonia alkanivorans [GN:gav]
Gene
C5O27_00260  [KO:K00163] [EC:1.2.4.1]
C5O27_01575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C5O27_06265  [KO:K01596] [EC:4.1.1.32]
C5O27_07485  [KO:K00031] [EC:1.1.1.42]
C5O27_12005  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C5O27_12185  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
C5O27_13465  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C5O27_14785  acnA; aconitate hydratase [KO:K27802]
C5O27_15775  [KO:K18118] [EC:2.8.3.18]
C5O27_16870  [KO:K00024] [EC:1.1.1.37]
C5O27_17655  [KO:K00240] [EC:1.3.5.1]
C5O27_17660  [KO:K00239] [EC:1.3.5.1]
C5O27_18525  kgd; multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
C5O27_18885  [KO:K01958] [EC:6.4.1.1]
C5O27_19065  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C5O27_19070  [KO:K00242]
C5O27_19075  [KO:K00239] [EC:1.3.5.1]
C5O27_19080  [KO:K00240] [EC:1.3.5.1]
C5O27_19540  [KO:K01676] [EC:4.2.1.2]
C5O27_19545  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
C5O27_20935  [KO:K01902] [EC:6.2.1.5]
C5O27_20940  [KO:K01903] [EC:6.2.1.5]
C5O27_21245  [KO:K01647] [EC:2.3.3.1]
C5O27_21300  [KO:K01647] [EC:2.3.3.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gav00010  Glycolysis / Gluconeogenesis
gav00053  Ascorbate and aldarate metabolism
gav00061  Fatty acid biosynthesis
gav00071  Fatty acid degradation
gav00190  Oxidative phosphorylation
gav00220  Arginine biosynthesis
gav00250  Alanine, aspartate and glutamate metabolism
gav00280  Valine, leucine and isoleucine degradation
gav00350  Tyrosine metabolism
gav00470  D-Amino acid metabolism
gav00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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