KEGG   PATHWAY: hmc00920
Entry
hmc00920                    Pathway                                
Name
Sulfur metabolism - Hyphomicrobium sp. MC1
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
hmc00920  Sulfur metabolism
hmc00920

Module
hmc_M00021  Cysteine biosynthesis, serine => cysteine [PATH:hmc00920]
hmc_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:hmc00920]
Other DBs
GO: 0006790
Organism
Hyphomicrobium sp. MC1 [GN:hmc]
Gene
HYPMC_0149  cysP; ABC transporter, periplasmic protein, putative sulfate/thiosulfate transporter [KO:K02048]
HYPMC_0713  cysP; ABC transporter, periplasmic protein, putative sulfate/thiosulfate transporter [KO:K23163]
HYPMC_0718  cysU; ABC transporter, permease, putative sulfate/thiosulfate transporter [KO:K02046]
HYPMC_0719  cysW; ABC transporter, permease, putative sulfate/thiosulfate transporter [KO:K02047]
HYPMC_0720  cysA; Sulfate/thiosulfate import ATP-binding protein CysA (Sulfate-transporting ATPase) [KO:K02045] [EC:7.3.2.3]
HYPMC_3406  ssuA; alkanesulfonate transport protein, periplasmic-binding subunit, ABC superfamily [KO:K15553]
HYPMC_3405  ssuA; alkanesulfonate transport protein, periplasmic-binding subunit, ABC superfamily [KO:K15553]
HYPMC_0156  ssuA; alkanesulfonate transport protein, periplasmic-binding subunit, ABC superfamily [KO:K15553]
HYPMC_3402  sulfonate transport system substrate-binding protein [KO:K15553]
HYPMC_3388  ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [KO:K15553]
HYPMC_0254  exported protein of unknown function [KO:K15553]
HYPMC_3419  ABC family transporter, periplasmic protein [KO:K15553]
HYPMC_3408  ssuC; alkanesulfonate transport protein, membrane component of ABC superfamily [KO:K15554]
HYPMC_0154  ssuC; alkanesulfonate transport protein, membrane component of ABC superfamily [KO:K15554]
HYPMC_3401  ssuC; alkanesulfonate transporter subunit; membrane component of ABC superfamily [KO:K15554]
HYPMC_3389  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [KO:K15554]
HYPMC_0253  putative Binding-protein-dependent transport system inner membrane component [KO:K15554]
HYPMC_3418  ABC superfamily transporter membrane protein [KO:K15554]
HYPMC_3409  ssuB; alkanesulfonate transport protein, ATP-binding protein [KO:K15555] [EC:7.6.2.14]
HYPMC_3400  ssuB; alkanesulfonate transport protein (ABC superfamily, atp_bind) [KO:K15555] [EC:7.6.2.14]
HYPMC_0153  ssuB; alkanesulfonate transport protein, ATP-binding protein [KO:K15555] [EC:7.6.2.14]
HYPMC_3390  tauB; Taurine import ATP-binding protein TauB [KO:K15555] [EC:7.6.2.14]
HYPMC_0255  conserved protein of unknown function [KO:K15555] [EC:7.6.2.14]
HYPMC_3417  ssuB; ATP-binding component of ABC superfamily; putative alkanesulfonate transporter subunit [KO:K15555] [EC:7.6.2.14]
HYPMC_0155  ssuD; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
HYPMC_0141  ssuD; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
HYPMC_3407  ssuD; alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
HYPMC_0136  ssuE; NAD(P)H-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
HYPMC_0433  putative NAD(P)H-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
HYPMC_1642  cysN; ATP-sulfurylase, subunit 1 (ATP:sulfate adenylyltransferase) [KO:K00956] [EC:2.7.7.4]
HYPMC_1643  cysD; ATP sulfurylase, subunit 2 (ATP:sulfate adenylyltransferase) [KO:K00957] [EC:2.7.7.4]
HYPMC_1807  putative adenylylsulphate kinase [KO:K00860] [EC:2.7.1.25]
HYPMC_1975  cysC; Adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
HYPMC_3170  Inositol monophosphatase [KO:K01082] [EC:3.1.3.7]
HYPMC_1982  cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
HYPMC_1644  cysH; Phosphoadenosine phosphosulfate reductase (PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylyl-sulfate reductase) (PAPS sulfotransferase) [KO:K00390] [EC:1.8.4.8 1.8.4.10]
HYPMC_2347  Sulfur oxidation protein SoxZ [KO:K17226]
HYPMC_2200  Thiosulfate-binding protein SoxY [KO:K17226]
HYPMC_2201  soxZ; sulfur oxidation protein SoxZ [KO:K17227]
HYPMC_2348  soxC; sulfite oxidase precursor [KO:K17225]
HYPMC_2349  conserved protein of unknown function; putative cytochrome c domain [KO:K22622] [EC:1.8.2.6]
HYPMC_1639  cysJ; sulfite reductase, alpha subunit (flavoprotein) [KO:K00380] [EC:1.8.1.2]
HYPMC_1640  cysI; sulfite reductase, beta subunit, NAD(P)-binding, heme-binding [KO:K00381] [EC:1.8.1.2]
HYPMC_0084  conserved protein of unknown function; putative flavoprotein oxidoreductase [KO:K17218] [EC:1.8.5.4]
HYPMC_2198  fccB; Sulfide dehydrogenase [flavocytochrome c] flavoprotein chain [KO:K17229] [EC:1.8.2.3]
HYPMC_2938  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
HYPMC_3675  MPST; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
HYPMC_0148  srpH; Serine acetyltransferase, plasmid [KO:K00640] [EC:2.3.1.30]
HYPMC_2110  cysE; serine acetyltransferase [KO:K00640] [EC:2.3.1.30]
HYPMC_3634  cysE; Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
HYPMC_3689  cysK; Cysteine synthase [KO:K01738] [EC:2.5.1.47]
HYPMC_4748  cysK; cysteine synthase (O-acetylserine sulfhydrolase) [KO:K01738] [EC:2.5.1.47]
HYPMC_4073  metX; homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
HYPMC_0031  metZ; O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
HYPMC_0137  alkanesulfonate monooxygenase [KO:K17228] [EC:1.14.14.35]
HYPMC_2243  tmoC; Toluene-4-monooxygenase system ferredoxin subunit [KO:K15762]
HYPMC_3853  putative AMP-dependent synthetase/acyl-CoA ligase [KO:K20034] [EC:6.2.1.44]
HYPMC_2959  acyl-CoA dehydrogenase [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
hmc00260  Glycine, serine and threonine metabolism
hmc00270  Cysteine and methionine metabolism
hmc00680  Methane metabolism
hmc00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

DBGET integrated database retrieval system