KEGG   PATHWAY: lja00195
Entry
lja00195                    Pathway                                
Name
Photosynthesis - Lotus japonicus
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
lja00195  Photosynthesis
lja00195

Organism
Lotus japonicus [GN:lja]
Gene
130739585  photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
130710951  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
130712375  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
130740783  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
130733272  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
130723220  oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
130728811  psbP-like protein 1, chloroplastic [KO:K02717]
130709526  photosynthetic NDH subunit of lumenal location 3, chloroplastic [KO:K08901]
130739804  photosynthetic NDH subunit of lumenal location 2, chloroplastic [KO:K08901]
130742659  oxygen-evolving enhancer protein 3-2, chloroplastic [KO:K08901]
130748243  photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
130737826  photosystem II 22 kDa protein, chloroplastic [KO:K03542]
130718733  photosystem II reaction center W protein, chloroplastic-like isoform X1 [KO:K02721]
130730569  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
130725868  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
130724317  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
130746770  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
130720875  photosystem II reaction center PSB28 protein, chloroplastic [KO:K08903]
130748933  photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
130718066  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
130718541  photosystem I reaction center subunit IV, chloroplastic [KO:K02693]
130722972  photosystem I reaction center subunit III, chloroplastic [KO:K02694]
130745555  photosystem I reaction center subunit V, chloroplastic [KO:K08905]
130709551  photosystem I reaction center subunit VI-2, chloroplastic-like [KO:K02695]
130745909  photosystem I reaction center subunit VI, chloroplastic-like isoform X1 [KO:K02695]
130715501  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
130728336  photosystem I reaction center subunit XI, chloroplastic [KO:K02699]
130712117  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
130713856  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
130747121  photosystem I subunit O [KO:K14332]
130746729  cytochrome b6-f complex iron-sulfur subunit, chloroplastic [KO:K02636] [EC:7.1.1.6]
130718111  cytochrome b6-f complex subunit 4 [KO:K02637]
130727859  plastocyanin [KO:K02638]
130710917  ferredoxin C 2, chloroplastic [KO:K02639]
130711442  ferredoxin [KO:K02639]
130747146  ferredoxin, root R-B2 [KO:K02639]
130723243  ferredoxin-like [KO:K02639]
130731111  ferredoxin, root R-B1-like [KO:K02639]
130741397  ferredoxin C 1, chloroplastic [KO:K02639]
130710942  ferredoxin--NADP reductase, leaf isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
130724397  ferredoxin--NADP reductase, root isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
130715747  cytochrome c6, chloroplastic [KO:K08906]
130714656  LOW QUALITY PROTEIN: ATP synthase subunit beta, chloroplastic-like [KO:K02112] [EC:7.1.2.2 7.2.2.1]
130721930  ATP synthase gamma chain 1, chloroplastic [KO:K02115]
130722151  LOW QUALITY PROTEIN: ATP synthase gamma chain 2, chloroplastic-like [KO:K02115]
130731420  ATP synthase subunit delta, chloroplastic [KO:K02113]
130727367  ATP synthase subunit b', chloroplastic [KO:K02109]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
lja00196  Photosynthesis - antenna proteins
lja00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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