KEGG   PATHWAY: lrd00195
Entry
lrd00195                    Pathway                                
Name
Photosynthesis - Lolium rigidum (rigid ryegrass)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
lrd00195  Photosynthesis
lrd00195

Organism
Lolium rigidum (rigid ryegrass) [GN:lrd]
Gene
124701183  photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
124703240  photosystem II protein D1-like [KO:K02703] [EC:1.10.3.9]
124685439  photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
124706147  photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
124707493  photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
124679378  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
124684831  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
124701095  psbP-like protein 1, chloroplastic [KO:K02717]
124670144  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
124670314  oxygen-evolving enhancer protein 2, chloroplastic [KO:K02717]
124704283  psbP-like protein 1, chloroplastic [KO:K02717]
124694485  psbP-like protein 1, chloroplastic [KO:K02717]
124676996  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
124692796  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
124653085  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
124670689  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
124674005  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
124687926  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
124675280  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
124675322  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
124675941  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
124687609  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
124669202  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
124669203  photosystem II 10 kDa polypeptide, chloroplastic [KO:K03541]
124670674  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
124670675  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
124689126  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
124659511  photosystem II 22 kDa protein 1, chloroplastic [KO:K03542]
124701514  uncharacterized protein LOC124701514 isoform X1 [KO:K02721]
124701596  uncharacterized protein LOC124701596 isoform X1 [KO:K02721]
124693636  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
124707346  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
124708831  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
124697358  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
124697366  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
124702395  photosystem II repair protein PSB27-H1, chloroplastic [KO:K08902]
124667218  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
124704681  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
124704596  photosystem I reaction center subunit II, chloroplastic [KO:K02692]
124704628  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
124669268  photosystem I reaction center subunit IV, chloroplastic-like [KO:K02693]
124669491  photosystem I reaction center subunit IV, chloroplastic-like [KO:K02693]
124704439  photosystem I reaction center subunit III, chloroplastic [KO:K02694]
124659775  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
124651833  photosystem I reaction center subunit V, chloroplastic [KO:K08905]
124707145  photosystem I reaction center subunit VI, chloroplastic [KO:K02695]
124669364  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
124676043  photosystem I reaction center subunit psaK, chloroplastic [KO:K02698]
124659784  photosystem I reaction center subunit XI, chloroplastic [KO:K02699]
124660964  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
124652087  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
124654060  photosystem I reaction center subunit N, chloroplastic [KO:K02701]
124670052  photosystem I subunit O [KO:K14332]
124669434  cytochrome b6-f complex iron-sulfur subunit, chloroplastic [KO:K02636] [EC:7.1.1.6]
124670392  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
124681272  plastocyanin, chloroplastic [KO:K02638]
124684975  plastocyanin, chloroplastic-like [KO:K02638]
124684977  plastocyanin, chloroplastic-like [KO:K02638]
124650263  ferredoxin-6, chloroplastic-like [KO:K02639]
124650301  ferredoxin, root R-B1-like [KO:K02639]
124692855  ferredoxin [KO:K02639]
124700024  ferredoxin C 2, chloroplastic-like [KO:K02639]
124700105  ferredoxin C 2, chloroplastic-like [KO:K02639]
124667071  ferredoxin, root R-B2-like [KO:K02639]
124667115  ferredoxin, root R-B2-like [KO:K02639]
124682061  ferredoxin-3, chloroplastic-like [KO:K02639]
124683540  ferredoxin-like [KO:K02639]
124703887  ferredoxin C 1, chloroplastic [KO:K02639]
124675365  ferredoxin-1-like [KO:K02639]
124691402  ferredoxin [KO:K02639]
124700730  ferredoxin--NADP reductase, root isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
124702439  ferredoxin--NADP reductase, root isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
124684934  ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
124674447  ferredoxin--NADP reductase, embryo isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
124674944  ferredoxin--NADP reductase, embryo isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
124691496  ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
124691545  ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
124678117  cytochrome c6, chloroplastic-like isoform X1 [KO:K08906]
124675924  cytochrome c6, chloroplastic-like [KO:K08906]
124697353  ATP synthase subunit beta, chloroplastic [KO:K02112] [EC:7.1.2.2 7.2.2.1]
124674185  ATP synthase subunit gamma, chloroplastic-like [KO:K02115]
124676668  ATP synthase subunit gamma, chloroplastic [KO:K02115]
124681045  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
124693153  ATP synthase delta chain, chloroplastic-like [KO:K02113]
124702104  ATP synthase subunit b', chloroplastic-like [KO:K02109]
124702121  ATP synthase subunit b', chloroplastic-like [KO:K02109]
124681046  ATP synthase subunit a, chloroplastic [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
lrd00196  Photosynthesis - antenna proteins
lrd00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
LinkDB

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