KEGG   PATHWAY: lyb03030
Entry
lyb03030                    Pathway                                
Name
DNA replication - Lysinibacillus sp. B2A1
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
lyb03030  DNA replication
lyb03030

Organism
Lysinibacillus sp. B2A1 [GN:lyb]
Gene
C3943_10170  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
C3943_08390  hypothetical protein [KO:K03763] [EC:2.7.7.7]
C3943_06320  PolC-type DNA polymerase III [KO:K03763] [EC:2.7.7.7]
C3943_00350  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
C3943_00430  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
C3943_11980  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
C3943_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
C3943_26955  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
C3943_02195  DNA helicase [KO:K02314] [EC:5.6.2.3]
C3943_12485  DNA primase [KO:K02316] [EC:2.7.7.101]
C3943_26980  single-stranded DNA-binding protein [KO:K03111]
C3943_18045  single-stranded DNA-binding protein [KO:K03111]
C3943_03650  single-stranded DNA-binding protein [KO:K03111]
C3943_09860  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
C3943_22760  hypothetical protein [KO:K03469] [EC:3.1.26.4]
C3943_06035  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
C3943_10555  ribonuclease HIII [KO:K03471] [EC:3.1.26.4]
C3943_10275  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
C3943_23660  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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