KEGG   PATHWAY: msyl00195
Entry
msyl00195                   Pathway                                
Name
Photosynthesis - Malus sylvestris (European crab apple)
Description
Photosynthesis in green plants and specialized bacteria is the process of utilizing light energy to synthesize organic compounds from carbon dioxide and water. It consists of the light dependent part (light reaction) and the light independent part (dark reaction, carbon fixation). The light reaction takes place in thylakoid, a membrane-bound compartment inside chloroplasts and cyanobacteria. The light energy is used by photosystems I and II to generate proton motive force and reducing power (NADPH or NADH). The proton motive force is used by ATP synthase to generate ATP, essentially in the same way as the mitochondrial respiratory chain. The supplies of ATP and NAD(P)H are then used to fix carbon dioxide.
Class
Metabolism; Energy metabolism
Pathway map
msyl00195  Photosynthesis
msyl00195

Module
msyl_M00157  F-type ATPase, prokaryotes and chloroplasts [PATH:msyl00195]
msyl_M00161  Photosystem II [PATH:msyl00195]
msyl_M00163  Photosystem I [PATH:msyl00195]
Organism
Malus sylvestris (European crab apple) [GN:msyl]
Gene
71712389  psbA; photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
126607098  photosystem II protein D1 [KO:K02703] [EC:1.10.3.9]
126608299  photosystem II protein D1-like [KO:K02703] [EC:1.10.3.9]
71712456  psbB; photosystem II CP47 chlorophyll apoprotein [KO:K02704]
126606423  photosystem II CP47 reaction center protein [KO:K02704]
71712415  psbC; photosystem II CP43 chlorophyll apoprotein [KO:K02705]
126608291  LOW QUALITY PROTEIN: photosystem II CP43 reaction center protein-like [KO:K02705]
71712414  psbD; photosystem II protein D2 [KO:K02706] [EC:1.10.3.9]
126609124  photosystem II D2 protein [KO:K02706] [EC:1.10.3.9]
71712444  psbE; photosystem II cytochrome b559 alpha subunit [KO:K02707]
71712443  psbF; photosystem II cytochrome b559 beta subunit [KO:K02708]
71712459  psbH; photosystem II phosphoprotein [KO:K02709]
71712395  psbI; photosystem II protein I [KO:K02710]
71712442  psbJ; photosystem II protein J [KO:K02711]
71712394  psbK; photosystem II protein K [KO:K02712]
71712409  psbM; photosystem II protein M [KO:K02714]
126589615  oxygen-evolving enhancer protein 1, chloroplastic-like [KO:K02716]
126603961  oxygen-evolving enhancer protein 1, chloroplastic [KO:K02716]
126611135  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
126629609  psbP-like protein 1, chloroplastic isoform X1 [KO:K02717]
126619123  psbP-like protein 1, chloroplastic [KO:K02717]
126634655  oxygen-evolving enhancer protein 2, chloroplastic-like [KO:K02717]
126585193  oxygen-evolving enhancer protein 3, chloroplastic-like [KO:K08901]
126588813  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
126615925  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
126595072  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like [KO:K08901]
126607287  photosynthetic NDH subunit of lumenal location 2, chloroplastic-like isoform X1 [KO:K08901]
126623213  oxygen-evolving enhancer protein 3-2, chloroplastic-like [KO:K08901]
126596885  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
126608421  photosynthetic NDH subunit of lumenal location 3, chloroplastic-like [KO:K08901]
126586916  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
126623826  photosystem II 10 kDa polypeptide, chloroplastic-like [KO:K03541]
126604608  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
126632904  photosystem II 22 kDa protein, chloroplastic-like [KO:K03542]
71712457  psbT; photosystem II protein T [KO:K02718]
126585893  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
126623451  photosystem II reaction center W protein, chloroplastic-like [KO:K02721]
126596244  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
126607706  photosystem II core complex proteins psbY, chloroplastic-like [KO:K02723]
71712417  psbZ; photosystem II protein Z [KO:K02724]
126610085  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
126633696  photosystem II repair protein PSB27-H1, chloroplastic-like [KO:K08902]
126587632  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
126624120  photosystem II reaction center PSB28 protein, chloroplastic-like [KO:K08903]
71712422  psaA; photosystem I P700 apoprotein A1 [KO:K02689] [EC:1.97.1.12]
126608287  photosystem I P700 chlorophyll a apoprotein A1 [KO:K02689] [EC:1.97.1.12]
126608292  photosystem I P700 chlorophyll a apoprotein A1-like [KO:K02689] [EC:1.97.1.12]
71712421  psaB; photosystem I P700 apoprotein A2 [KO:K02690] [EC:1.97.1.12]
126608288  photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
126608293  photosystem I P700 chlorophyll a apoprotein A2 [KO:K02690] [EC:1.97.1.12]
71712493  psaC; photosystem I subunit VII [KO:K02691] [EC:1.97.1.12]
126607013  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
126596575  photosystem I reaction center subunit II, chloroplastic-like [KO:K02692]
126587521  photosystem I reaction center subunit IV B, chloroplastic [KO:K02693]
126622744  photosystem I reaction center subunit IV B, chloroplastic-like [KO:K02693]
126587967  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
126622062  photosystem I reaction center subunit III, chloroplastic-like [KO:K02694]
126616635  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
126591286  photosystem I reaction center subunit V, chloroplastic-like [KO:K08905]
126583304  photosystem I reaction center subunit VI-2, chloroplastic [KO:K02695]
126610465  photosystem I reaction center subunit VI-2, chloroplastic-like [KO:K02695]
71712438  psaI; photosystem I subunit VIII [KO:K02696]
71712449  psaJ; photosystem I subunit IX [KO:K02697]
126585873  photosystem I reaction center subunit psaK, chloroplastic isoform X1 [KO:K02698]
126624008  photosystem I reaction center subunit psaK, chloroplastic-like [KO:K02698]
126619832  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
126593596  photosystem I reaction center subunit XI, chloroplastic-like [KO:K02699]
126617926  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
126603973  photosystem I reaction center subunit N, chloroplastic-like [KO:K02701]
126614182  photosystem I subunit O-like isoform X1 [KO:K14332]
126591241  photosystem I subunit O-like [KO:K14332]
71712441  petA; cytochrome f [KO:K02634]
126608073  cytochrome f [KO:K02634]
71712460  petB; cytochrome b6 [KO:K02635]
126583394  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
126612173  cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [KO:K02636] [EC:7.1.1.6]
71712461  petD; cytochrome b6/f complex subunit IV [KO:K02637]
71712446  petG; cytochrome b6/f complex subunit V [KO:K02640]
71712408  petN; cytochrome b6/f complex subunit VIII [KO:K03689]
126604153  plastocyanin [KO:K02638]
126632462  plastocyanin-like [KO:K02638]
126597503  ferredoxin C 1, chloroplastic [KO:K02639]
126615154  ferredoxin, root R-B1-like [KO:K02639]
126602016  ferredoxin-like [KO:K02639]
126591381  ferredoxin, root R-B1-like [KO:K02639]
126632663  ferredoxin, leaf L-A-like [KO:K02639]
126608200  ferredoxin C 2, chloroplastic-like [KO:K02639]
126587702  ferredoxin--NADP reductase, root isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
126604941  ferredoxin--NADP reductase, leaf isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
126605108  ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like [KO:K02641] [EC:1.18.1.2]
126624754  ferredoxin--NADP reductase, root isozyme, chloroplastic [KO:K02641] [EC:1.18.1.2]
126620656  cytochrome c6, chloroplastic-like isoform X1 [KO:K08906]
126588602  ATP synthase epsilon chain, chloroplastic [KO:K02114]
71712434  atpE; ATP synthase CF1 epsilon subunit [KO:K02114]
71712435  atpB; ATP synthase CF1 beta subunit [KO:K02112] [EC:7.1.2.2 7.2.2.1]
126608070  LOW QUALITY PROTEIN: ATP synthase subunit beta, chloroplastic-like [KO:K02112] [EC:7.1.2.2 7.2.2.1]
126627431  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
126586355  ATP synthase gamma chain, chloroplastic [KO:K02115]
126588315  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
126623879  ATP synthase gamma chain, chloroplastic-like [KO:K02115]
71712399  atpA; ATP synthase CF1 alpha subunit [KO:K02111] [EC:7.1.2.2 7.2.2.1]
126608069  ATP synthase subunit alpha, chloroplastic [KO:K02111] [EC:7.1.2.2 7.2.2.1]
126587563  ATP synthase subunit delta, chloroplastic-like [KO:K02113]
126633807  uncharacterized protein LOC126633807 [KO:K02113]
126624312  ATP synthase subunit delta, chloroplastic-like [KO:K02113]
126601727  ATP synthase subunit b', chloroplastic [KO:K02109]
126602118  putative ATP synthase protein YMF19 [KO:K02109]
73938924  atp8; ATP synthase F0 subunit 8 [KO:K02109]
71712400  atpF; ATP synthase CF0 subunit I [KO:K02109]
71712401  atpH; ATP synthase CF0 subunit III [KO:K02110]
71712402  atpI; ATP synthase CF0 subunit IV [KO:K02108]
126608074  ATP synthase subunit a, chloroplastic [KO:K02108]
Compound
C00001  H2O
C00002  ATP
C00005  NADPH
C00006  NADP+
C00007  Oxygen
C00008  ADP
C00009  Orthophosphate
C00034  Manganese
C00080  H+
C02061  Plastoquinone
C16693  Plastoquinol
Reference
PMID:14764885
  Authors
Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S.
  Title
Architecture of the photosynthetic oxygen-evolving center.
  Journal
Science 303:1831-8 (2004)
DOI:10.1126/science.1093087
Reference
PMID:12518057
  Authors
Kamiya N, Shen JR.
  Title
Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.7-A resolution.
  Journal
Proc Natl Acad Sci U S A 100:98-103 (2003)
DOI:10.1073/pnas.0135651100
Reference
PMID:11217865
  Authors
Zouni A, Witt HT, Kern J, Fromme P, Krauss N, Saenger W, Orth P.
  Title
Crystal structure of photosystem II from Synechococcus elongatus at 3.8 A resolution.
  Journal
Nature 409:739-743 (2001)
DOI:10.1038/35055589
Reference
PMID:11418848
  Authors
Jordan P, Fromme P, Witt HT, Klukas O, Saenger W, Krauss N.
  Title
Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.
  Journal
Nature 411:909-917 (2001)
DOI:10.1038/35082000
Reference
PMID:11369223
  Authors
Jones MR, Fyfe PK.
  Title
Photosynthesis: new light on biological oxygen production.
  Journal
Curr Biol 17:R318-R321 (2001)
DOI:10.1016/S0960-9822(01)00174-9
Reference
PMID:11914373
  Authors
Shen G, Zhao J, Reimer SK, Antonkine ML, Cai Q, Weiland SM, Golbeck JH, Bryant DA.
  Title
Assembly of photosystem I. I. Inactivation of the rubA gene encoding a membrane-associated rubredoxin in the cyanobacterium Synechococcus sp. PCC 7002 causes a loss of photosystem I activity.
  Journal
J Biol Chem 277:20343-54 (2002)
DOI:10.1074/jbc.M201103200
Related
pathway
msyl00196  Photosynthesis - antenna proteins
msyl00710  Carbon fixation by Calvin cycle
KO pathway
ko00195   
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